C430002N11Rik Gene Detail

Summary

• Symbol
  C430002N11Rik
• Name
  RIKEN cDNA C430002N11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442576
  NCBI Gene: 319707
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:96647615-96656450 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 50.71 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  534 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442576	lncRNA gene	Chr9:96613349-96664546 (+)
129S1/SvImJ	ENSMUSG00200016625	lncRNA gene	Chr9:93766742-93783643 (+)
A/J	ENSMUSG00195020104	lncRNA gene	Chr9:93026949-93043817 (+)
AKR/J	ENSMUSG00220041617	lncRNA gene	Chr9:93380112-93397073 (+)
BALB/cJ	ENSMUSG00180024641	lncRNA gene	Chr9:93346997-93363864 (+)
C3H/HeJ	ENSMUSG00175012663	lncRNA gene	Chr9:93686916-93703781 (+)
C57BL/6NJ	ENSMUSG00215029358	lncRNA gene	Chr9:93663932-93680854 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013872	unclassified non-coding RNA gene	Chr9:92387139-92403966 (+)
CAST/EiJ	ENSTCUG00005013626	lncRNA gene	Chr9:93513881-93535219 (+)
CBA/J	ENSMUSG00210015769	lncRNA gene	Chr9:93528954-93545816 (+)
DBA/2J	ENSMUSG00185012498	lncRNA gene	Chr9:93715072-93731932 (+)
FVB/NJ	ENSMUSG00205026834	lncRNA gene	Chr9:93719894-93736765 (+)
JF1/MsJ	ENSUMUG00000046968	lncRNA gene	Chr9:93425853-93443234 (+)
LP/J	ENSMUSG00230021608	lncRNA gene	Chr9:93883378-93900226 (+)
NOD/ShiLtJ	ENSMUSG00190039576	lncRNA gene	Chr9:93350431-93367341 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010026933	lncRNA gene	Chr9:93421032-93438314 (+)
SPRET/EiJ	ENSMSPG00010004041	lncRNA gene	Chr9:95225948-95242922 (+)
WSB/EiJ	ENSIUOG00005024916	lncRNA gene	Chr9:92789815-92806703 (+)

Homology

• Gene Tree
  C430002N11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving C430002N11Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  50
• RefSeq
  4

• Ensembl
  ENSMUSG00000101581 (Evidence)
• NCBI Gene
  319707

Representative Sequences			Length	Strain/Species
genomic	319707	NCBI Gene Model | MGI Sequence Detail	8836	C57BL/6J
transcript	NR_102296	RefSeq | MGI Sequence Detail	1681	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for C430002N11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86616	Chr9:96647625-96647633 (+)	14 bp
Tssr86617	Chr9:96648864-96648889 (+)	1,262 bp