A830011K09Rik Gene Detail

Summary

• Symbol
  A830011K09Rik
• Name
  RIKEN cDNA A830011K09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442570
  NCBI Gene: 319702
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:138400103-138406590 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 69.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  188 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442570	lncRNA gene	Chr6:138397975-138406590 (+)
129S1/SvImJ	ENSMUSG00200034542	lncRNA gene	Chr6:135939464-135945933 (+)
A/J	ENSMUSG00195008840	lncRNA gene	Chr6:134829839-134836379 (+)
AKR/J	ENSMUSG00220034700	lncRNA gene	Chr6:133057910-133064450 (+)
BALB/cJ	ENSMUSG00180018575	lncRNA gene	Chr6:134922947-134929494 (+)
C3H/HeJ	ENSMUSG00175036782	lncRNA gene	Chr6:134852033-134858573 (+)
C57BL/6NJ	ENSMUSG00215027605	lncRNA gene	Chr6:135039210-135045697 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003953	antisense lncRNA gene	Chr6:136382116-136388666 (+)
CAST/EiJ	ENSTCUG00005036898	lncRNA gene	Chr6:135709705-135716199 (+)
CBA/J	ENSMUSG00210004955	lncRNA gene	Chr6:134912579-134919119 (+)
DBA/2J	ENSMUSG00185023804	lncRNA gene	Chr6:135564364-135570444 (+)
FVB/NJ	ENSMUSG00205032423	lncRNA gene	Chr6:134014336-134020788 (+)
JF1/MsJ	ENSUMUG00000011690	lncRNA gene	Chr6:134225035-134231572 (+)
LP/J	ENSMUSG00230009559	lncRNA gene	Chr6:136735768-136742236 (+)
NOD/ShiLtJ	ENSMUSG00190007013	lncRNA gene	Chr6:135402598-135409138 (+)
NZO/HlLtJ	ENSMUSG00225007616	lncRNA gene	Chr6:139580126-139586587 (+)
PWK/PhJ	ENSLUMG00010034697	lncRNA gene	Chr6:133300047-133306621 (+)
SPRET/EiJ	ENSMSPG00010035624	lncRNA gene	Chr6:137203394-137209983 (+)
WSB/EiJ	ENSIUOG00005023917	lncRNA gene	Chr6:135698184-135704697 (+)

Homology

• Gene Tree
  A830011K09Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  2

• Ensembl
  ENSMUSG00000089957 (Evidence)
• NCBI Gene
  319702

Representative Sequences			Length	Strain/Species
genomic	319702	NCBI Gene Model | MGI Sequence Detail	6488	C57BL/6J
transcript	NR_126072	RefSeq | MGI Sequence Detail	2411	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A830011K09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59401	Chr6:138399233-138399244 (+)	-864 bp