5031425F14Rik MGI Mouse Gene Detail - MGI:2442533

Sequence Map

Chr2:166289371-166300690 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442533	lncRNA gene	Chr2:166289371-166301207 (+)
129S1/SvImJ	ENSMUSG00200040683	lncRNA gene	Chr2:163167424-163179310 (+)
A/J	ENSMUSG00195025212	lncRNA gene	Chr2:163515934-163527716 (+)
AKR/J	ENSMUSG00220036399	lncRNA gene	Chr2:162841249-162853069 (+)
BALB/cJ	ENSMUSG00180040211	lncRNA gene	Chr2:162969577-162981360 (+)
C3H/HeJ	ENSMUSG00175041250	lncRNA gene	Chr2:163714533-163726346 (+)
C57BL/6NJ	ENSMUSG00215029405	lncRNA gene	Chr2:163164352-163176132 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009511	lncRNA gene	Chr2:162066177-162078458 (+)
CBA/J	ENSMUSG00210045484	lncRNA gene	Chr2:163650001-163661785 (+)
DBA/2J	ENSMUSG00185026459	lncRNA gene	Chr2:163381764-163393586 (+)
FVB/NJ	ENSMUSG00205031349	lncRNA gene	Chr2:162396572-162408354 (+)
JF1/MsJ	ENSUMUG00000044724	lncRNA gene	Chr2:163017610-163029611 (+)
LP/J	ENSMUSG00230014026	lncRNA gene	Chr2:164928350-164940236 (+)
NOD/ShiLtJ	ENSMUSG00190041658	lncRNA gene	Chr2:163054967-163066748 (+)
NZO/HlLtJ	ENSMUSG00225053790	lncRNA gene	Chr2:172943794-172955550 (+)
PWK/PhJ	ENSLUMG00010047648	lncRNA gene	Chr2:162925966-162938338 (+)
SPRET/EiJ	ENSMSPG00010030074	lncRNA gene	Chr2:165671653-165683434 (+)
WSB/EiJ	ENSIUOG00005025951	lncRNA gene	Chr2:162772197-162784005 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	319684	NCBI Gene Model \| MGI Sequence Detail	11320	C57BL/6J	± kb
	transcript	NR_015558	RefSeq \| MGI Sequence Detail	1636	C57BL/6

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Summaries

All 8
Earliest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Latest

J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 5031425F14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21770	Chr2:166289461-166289498 (+)	109 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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