D830026I12Rik Gene Detail

Summary

• Symbol
  D830026I12Rik
• Name
  RIKEN cDNA D830026I12 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442531
  NCBI Gene: 319682
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:17197750-17205694 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 7.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  392 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442531	lncRNA gene	Chr6:17197589-17210206 (+)
129S1/SvImJ	ENSMUSG00200019983	lncRNA gene	Chr6:14245105-14257619 (+)
A/J	ENSMUSG00195013287	lncRNA gene	Chr6:14189551-14202056 (+)
AKR/J	ENSMUSG00220001024	lncRNA gene	Chr6:13763454-13775958 (+)
BALB/cJ	ENSMUSG00180001371	lncRNA gene	Chr6:14333265-14345770 (+)
C3H/HeJ	ENSMUSG00175017172	lncRNA gene	Chr6:14119602-14132106 (+)
C57BL/6NJ	ENSMUSG00215012521	lncRNA gene	Chr6:14253905-14266344 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006290	lincRNA gene	Chr6:12820852-12833290 (+)
CAST/EiJ	ENSTCUG00005022190	lncRNA gene	Chr6:13962860-13975247 (+)
CBA/J	ENSMUSG00210006874	lncRNA gene	Chr6:14147176-14159680 (+)
DBA/2J	ENSMUSG00185026740	lncRNA gene	Chr6:14273686-14286190 (+)
FVB/NJ	ENSMUSG00205008726	lncRNA gene	Chr6:14203965-14216471 (+)
JF1/MsJ	ENSUMUG00000001644	lncRNA gene	Chr6:14059137-14071598 (+)
LP/J	ENSMUSG00230003320	lncRNA gene	Chr6:15275722-15288239 (+)
NOD/ShiLtJ	ENSMUSG00190010560	lncRNA gene	Chr6:14031775-14044211 (+)
NZO/HlLtJ	ENSMUSG00225006242	lncRNA gene	Chr6:17159615-17172119 (+)
PWK/PhJ	ENSLUMG00010020132	lncRNA gene	Chr6:13780783-13793268 (+)
SPRET/EiJ	ENSMSPG00010015216	lncRNA gene	Chr6:14058257-14070745 (+)
WSB/EiJ	ENSIUOG00005003704	lncRNA gene	Chr6:14252497-14264984 (+)

Homology

• Gene Tree
  D830026I12Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54
• RefSeq
  2

• Ensembl
  ENSMUSG00000085171 (Evidence)
• NCBI Gene
  319682

Representative Sequences			Length	Strain/Species
genomic	319682	NCBI Gene Model | MGI Sequence Detail	7945	C57BL/6J
transcript	NR_102304	RefSeq | MGI Sequence Detail	1609	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for D830026I12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55026	Chr6:17198100-17198109 (+)	355 bp