D430040D24Rik Gene Detail

Summary

• Symbol
  D430040D24Rik
• Name
  RIKEN cDNA D430040D24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442526
  NCBI Gene: 319678
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:36596782-36617346 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 15.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  601 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442526	lncRNA gene	Chr1:36596782-36617346 (+)
129S1/SvImJ	ENSMUSG00200004644	lncRNA gene	Chr1:34185151-34193064 (+)
A/J	ENSMUSG00195045344	lncRNA gene	Chr1:33805439-33813363 (+)
AKR/J	ENSMUSG00220010059	lncRNA gene	Chr1:33827323-33835247 (+)
BALB/cJ	ENSMUSG00180011871	lncRNA gene	Chr1:33930484-33938397 (+)
C3H/HeJ	ENSMUSG00175001447	lncRNA gene	Chr1:33809544-33817468 (+)
C57BL/6NJ	ENSMUSG00215034560	lncRNA gene	Chr1:33907444-33915357 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013232	unclassified non-coding RNA gene	Chr1:31209018-31216950 (+)
CAST/EiJ	ENSTCUG00005003059	lncRNA gene	Chr1:33984934-33992849 (+)
CBA/J	ENSMUSG00210006727	lncRNA gene	Chr1:33652631-33660555 (+)
DBA/2J	ENSMUSG00185011298	lncRNA gene	Chr1:34736914-34744835 (+)
FVB/NJ	ENSMUSG00205039933	lncRNA gene	Chr1:33831569-33839493 (+)
JF1/MsJ	ENSUMUG00000030768	lncRNA gene	Chr1:33951278-33959193 (+)
LP/J	ENSMUSG00230025945	lncRNA gene	Chr1:34805993-34813905 (+)
NOD/ShiLtJ	ENSMUSG00190038127	lncRNA gene	Chr1:33847569-33855482 (+)
NZO/HlLtJ	ENSMUSG00225014420	lncRNA gene	Chr1:38040705-38048629 (+)
PWK/PhJ	ENSLUMG00010037570	lncRNA gene	Chr1:33480049-33487974 (+)
SPRET/EiJ	ENSMSPG00010030978	lncRNA gene	Chr1:34964555-34972514 (+)
WSB/EiJ	ENSIUOG00005038940	lncRNA gene	Chr1:33795386-33803310 (+)

Homology

• Gene Tree
  D430040D24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving D430040D24Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000087589 (Evidence)
• NCBI Gene
  319678

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087589	Ensembl Gene Model | MGI Sequence Detail	20565	C57BL/6J
transcript	ENSMUST00000194426	Ensembl | MGI Sequence Detail	1967	Not Applicable

Molecular
Reagents

• All nucleic 11

  cDNA 11

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for D430040D24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40	Chr1:36596776-36596812 (+)	12 bp