D430040D24Rik Gene Detail

Summary

• Symbol
  D430040D24Rik
• Name
  RIKEN cDNA D430040D24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442526
  NCBI Gene: 319678
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:36596782-36604694 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 15.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442526	lncRNA gene	Chr1:36596782-36604694 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015092	unclassified non-coding RNA gene	Chr1:35096154-35104118 (+)
A/J	MGP_AJ_G0015065	unclassified non-coding RNA gene	Chr1:34156044-34163968 (+)
AKR/J	MGP_AKRJ_G0015028	unclassified non-coding RNA gene	Chr1:34638499-34646423 (+)
BALB/cJ	MGP_BALBcJ_G0015028	unclassified non-coding RNA gene	Chr1:33845710-33853622 (+)
C3H/HeJ	MGP_C3HHeJ_G0014851	unclassified non-coding RNA gene	Chr1:34833829-34841753 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015485	unclassified non-coding RNA gene	Chr1:36683911-36692605 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013232	unclassified non-coding RNA gene	Chr1:31209018-31216950 (+)
CAST/EiJ	MGP_CASTEiJ_G0014406	unclassified non-coding RNA gene	Chr1:34720530-34728463 (+)
CBA/J	MGP_CBAJ_G0014830	unclassified non-coding RNA gene	Chr1:37639283-37647245 (+)
DBA/2J	MGP_DBA2J_G0014923	unclassified non-coding RNA gene	Chr1:33491437-33499396 (+)
FVB/NJ	MGP_FVBNJ_G0014935	unclassified non-coding RNA gene	Chr1:33014961-33023301 (+)
LP/J	MGP_LPJ_G0015006	unclassified non-coding RNA gene	Chr1:35463841-35473325 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014962	unclassified non-coding RNA gene	Chr1:39865238-39873150 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015523	unclassified non-coding RNA gene	Chr1:34672579-34681570 (+)
PWK/PhJ	MGP_PWKPhJ_G0014199	unclassified non-coding RNA gene	Chr1:33244295-33252563 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013988	unclassified non-coding RNA gene	Chr1:34622502-34630446 (+)
WSB/EiJ	MGP_WSBEiJ_G0014510	unclassified non-coding RNA gene	Chr1:34622948-34630872 (+)

Homology

• Gene Tree
  D430040D24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving D430040D24Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000087589 (Evidence)
• NCBI Gene
  319678

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087589	Ensembl Gene Model | MGI Sequence Detail	7913	C57BL/6J
transcript	ENSMUST00000194426	Ensembl | MGI Sequence Detail	1967	Not Applicable

Molecular
Reagents

• All nucleic 11

  cDNA 11

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for D430040D24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40	Chr1:36596776-36596812 (+)	12 bp