A930004J17Rik Gene Detail

Summary

• Symbol
  A930004J17Rik
• Name
  RIKEN cDNA A930004J17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442442
  NCBI Gene: 319635
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:131605939-131610548 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442442	lncRNA gene	Chr4:131605939-131610548 (+)
129S1/SvImJ	ENSMUSG00200020950	unclassified gene	Chr4:125060203-125064816 (+)
A/J	ENSMUSG00195044861	unclassified gene	Chr4:126385111-126389720 (+)
AKR/J	ENSMUSG00220047475	unclassified gene	Chr4:125376867-125381476 (+)
BALB/cJ	ENSMUSG00180049552	unclassified gene	Chr4:124018729-124023338 (+)
C3H/HeJ	ENSMUSG00175047775	unclassified gene	Chr4:125031154-125035763 (+)
C57BL/6NJ	ENSMUSG00215052273	unclassified gene	Chr4:126535047-126539656 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001159	unclassified gene	Chr4:121519632-121524288 (+)
CAST/EiJ	ENSTCUG00005048307	unclassified gene	Chr4:125924849-125929460 (+)
CBA/J	ENSMUSG00210054025	unclassified gene	Chr4:124660117-124664726 (+)
DBA/2J	ENSMUSG00185053128	unclassified gene	Chr4:126192562-126197171 (+)
FVB/NJ	ENSMUSG00205049365	unclassified gene	Chr4:124433414-124438013 (+)
JF1/MsJ	ENSUMUG00000047477	unclassified gene	Chr4:126856352-126860959 (+)
LP/J	ENSMUSG00230038736	unclassified gene	Chr4:129998737-130003350 (+)
NOD/ShiLtJ	ENSMUSG00190048574	unclassified gene	Chr4:124424875-124429484 (+)
NZO/HlLtJ	ENSMUSG00225026664	unclassified gene	Chr4:135903309-135907918 (+)
PWK/PhJ	ENSLUMG00010050117	unclassified gene	Chr4:123877957-123882566 (+)
SPRET/EiJ	ENSMSPG00010046390	unclassified gene	Chr4:125940762-125945369 (+)
WSB/EiJ	ENSIUOG00005045801	unclassified gene	Chr4:124311771-124316380 (+)

Homology

• Gene Tree
  A930004J17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving A930004J17Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000102602 (Evidence)
• NCBI Gene
  319635

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102602	Ensembl Gene Model | MGI Sequence Detail	4610	C57BL/6J
transcript	AK044267	GenBank | ENA | DDBJ | MGI Sequence Detail	4611	C57BL/6J

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8