9530059O14Rik Gene Detail

Summary

• Symbol
  9530059O14Rik
• Name
  RIKEN cDNA 9530059O14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442421
  NCBI Gene: 118567689, 319626
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr9:122397495-122541477 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 73.03 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  3381 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442421	lncRNA gene	Chr9:122397495-122541477 (+)
129S1/SvImJ	ENSMUSG00200031282	lncRNA gene	Chr9:119529202-119636277 (+)
A/J	ENSMUSG00195028549	lncRNA gene	Chr9:118675210-118782269 (+)
AKR/J	ENSMUSG00220019547	lncRNA gene	Chr9:119140704-119247820 (+)
BALB/cJ	ENSMUSG00180031990	lncRNA gene	Chr9:119215053-119322111 (+)
C3H/HeJ	ENSMUSG00175019091	lncRNA gene	Chr9:119451407-119558468 (+)
C57BL/6NJ	ENSMUSG00215033506	lncRNA gene	Chr9:119364293-119471399 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006847	lincRNA gene	Chr9:117910235-118005386 (+)
CAST/EiJ	ENSTCUG00005016948	lncRNA gene	Chr9:119043688-119144247 (+)
CBA/J	ENSMUSG00210041767	lncRNA gene	Chr9:119180477-119281356 (+)
DBA/2J	ENSMUSG00185016912	lncRNA gene	Chr9:119516124-119617001 (+)
FVB/NJ	ENSMUSG00205035290	lncRNA gene	Chr9:119341790-119448854 (+)
JF1/MsJ	ENSUMUG00000050236	lncRNA gene	Chr9:119314744-119415553 (+)
LP/J	ENSMUSG00230037969	lncRNA gene	Chr9:119669346-119776453 (+)
NOD/ShiLtJ	ENSMUSG00190015087	lncRNA gene	Chr9:119124517-119225167 (+)
NZO/HlLtJ	ENSMUSG00225023756	lncRNA gene	Chr9:119929656-120036751 (+)
PWK/PhJ	ENSLUMG00010039248	lncRNA gene	Chr9:119200271-119301777 (+)
SPRET/EiJ	ENSMSPG00010025045	lncRNA gene	Chr9:120912418-121012156 (+)
WSB/EiJ	ENSIUOG00005023157	lncRNA gene	Chr9:118548144-118649216 (+)

Homology

• Gene Tree
  9530059O14Rik
  

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  76

• Ensembl
  ENSMUSG00000097736 (Evidence)
• NCBI Gene
  118567689, 319626

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097736	Ensembl Gene Model | MGI Sequence Detail	143983	C57BL/6J
transcript	ENSMUST00000181107	Ensembl | MGI Sequence Detail	3978	Not Applicable

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 3

References

• Summaries
  All 12
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 9530059O14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87846	Chr9:122398153-122398155 (+)	659 bp
Tssr87847	Chr9:122401558-122401576 (+)	4,072 bp
Tssr87848	Chr9:122430220-122430228 (+)	32,729 bp
Tssr87853	Chr9:122515830-122515834 (+)	118,337 bp
Tssr87854	Chr9:122515860-122515867 (+)	118,369 bp