Fzd10os Gene Detail

Summary

• Symbol
  Fzd10os
• Name
  frizzled class receptor 10, opposite strand
• Synonyms
  5930412G12Rik, Fzd10as

• Feature Type
  lncRNA gene
• IDs
  MGI:2442398
  NCBI Gene: 319616
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:128656194-128677751 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 67.67 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  699 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442398	lncRNA gene	Chr5:128656151-128679570 (-)
129S1/SvImJ	ENSMUSG00200046923	lncRNA gene	Chr5:122393183-122414821 (-)
A/J	ENSMUSG00195051558	lncRNA gene	Chr5:121924853-121946516 (-)
AKR/J	ENSMUSG00220050000	lncRNA gene	Chr5:121402484-121424155 (-)
BALB/cJ	ENSMUSG00180044755	lncRNA gene	Chr5:122032339-122053998 (-)
C3H/HeJ	ENSMUSG00175043716	lncRNA gene	Chr5:124008053-124029730 (-)
C57BL/6NJ	ENSMUSG00215049905	lncRNA gene	Chr5:122070747-122092402 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006214	lincRNA gene	Chr5:121457701-121479495 (-)
CAST/EiJ	ENSTCUG00005010584	lncRNA gene	Chr5:121265507-121287120 (-)
CBA/J	ENSMUSG00210008115	lncRNA gene	Chr5:122758796-122780465 (-)
DBA/2J	ENSMUSG00185008344	lncRNA gene	Chr5:125811371-125833017 (-)
FVB/NJ	ENSMUSG00205047792	lncRNA gene	Chr5:121693260-121714921 (-)
JF1/MsJ	ENSUMUG00000053854	lncRNA gene	Chr5:128697717-128719367 (-)
LP/J	ENSMUSG00230048333	lncRNA gene	Chr5:129909175-129930810 (-)
NOD/ShiLtJ	ENSMUSG00190046343	lncRNA gene	Chr5:121679556-121701197 (-)
NZO/HlLtJ	ENSMUSG00225014662	lncRNA gene	Chr5:137604611-137626257 (-)
PWK/PhJ	ENSLUMG00010045908	lncRNA gene	Chr5:120575903-120597768 (-)
SPRET/EiJ	ENSMSPG00010034920	lncRNA gene	Chr5:123905377-123927056 (-)
WSB/EiJ	ENSIUOG00005036058	lncRNA gene	Chr5:124385261-124406883 (-)

Homology

• Human Ortholog
  FZD10-AS1, FZD10 antisense RNA 1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  FZD10-AS1, FZD10 antisense RNA 1
  
• Synonyms
  FZD10-DT
• Links
  HGNC:48632

  NCBI Gene ID: 440119

  
  
• Chr Location
  12q24.33; chr12:130144315-130163495 (-)  GRCh38

---

• MGI Vertebrate Homology
  Fzd10os stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: FZD10-AS1
• Gene Tree
  Fzd10os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  23
• Chemically induced (other)
  1
• Gene trapped
  21
• Radiation induced
  1
• Genomic Mutations
  2 involving Fzd10os
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  82
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000072591 (Evidence)
• NCBI Gene
  319616

Representative Sequences			Length	Strain/Species
genomic	319616	NCBI Gene Model | MGI Sequence Detail	21558	C57BL/6J
transcript	NR_015517	RefSeq | MGI Sequence Detail	2405	C57BL/6
polypeptide	Q3TYX6	UniProt | EBI | MGI Sequence Detail	88	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:6306072

References

• Summaries
  All 23

  Phenotypes 8
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Fzd10os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr53470	Chr5:128677738-128677770 (-)	-3 bp
Tssr53469	Chr5:128677706-128677737 (-)	29 bp