D830032E09Rik Gene Detail

Summary

• Symbol
  D830032E09Rik
• Name
  RIKEN cDNA D830032E09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442347
  NCBI Gene: 319596
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:107844989-107878677 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  847 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442347	lncRNA gene	Chr1:107844955-107985998 (+)
129S1/SvImJ	ENSMUSG00200000418	lncRNA gene	Chr1:105131104-105234413 (+)
A/J	ENSMUSG00195007847	lncRNA gene	Chr1:104629028-104740159 (+)
AKR/J	ENSMUSG00220000242	lncRNA gene	Chr1:104651396-104761592 (+)
BALB/cJ	ENSMUSG00180000553	lncRNA gene	Chr1:104914540-105025672 (+)
C3H/HeJ	ENSMUSG00175000565	lncRNA gene	Chr1:104844285-104956185 (+)
C57BL/6NJ	ENSMUSG00215007840	lncRNA gene	Chr1:104840445-104951579 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004470	lincRNA gene	Chr1:100425643-100527037 (+)
CAST/EiJ	ENSTCUG00005002829	lncRNA gene	Chr1:104158817-104264449 (+)
CBA/J	ENSMUSG00210000242	lncRNA gene	Chr1:104724378-104835494 (+)
DBA/2J	ENSMUSG00185008682	lncRNA gene	Chr1:109154417-109257746 (+)
FVB/NJ	ENSMUSG00205008328	lncRNA gene	Chr1:104051763-104184940 (+)
JF1/MsJ	ENSUMUG00000000164	lncRNA gene	Chr1:107745336-107856373 (+)
LP/J	ENSMUSG00230000151	lncRNA gene	Chr1:108417049-108520361 (+)
NOD/ShiLtJ	ENSMUSG00190000526	lncRNA gene	Chr1:104780328-104891462 (+)
NZO/HlLtJ	ENSMUSG00225000513	lncRNA gene	Chr1:112325684-112430283 (+)
PWK/PhJ	ENSLUMG00010000240	lncRNA gene	Chr1:104147020-104257484 (+)
SPRET/EiJ	ENSMSPG00010000561	lncRNA gene	Chr1:106390589-106519836 (+)
WSB/EiJ	ENSIUOG00005001033	lncRNA gene	Chr1:104519312-104623920 (+)

Homology

• Gene Tree
  D830032E09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving D830032E09Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  117
• RefSeq
  2

• Ensembl
  ENSMUSG00000100457 (Evidence)
• NCBI Gene
  319596

Representative Sequences			Length	Strain/Species
genomic	319596	NCBI Gene Model | MGI Sequence Detail	33689	C57BL/6J
transcript	NR_102307	RefSeq | MGI Sequence Detail	2219	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 10

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for D830032E09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8344	Chr1:107844984-107844993 (+)	0 bp
Tssr8345	Chr1:107845009-107845032 (+)	32 bp