9330133O14Rik Gene Detail

Summary

• Symbol
  9330133O14Rik
• Name
  RIKEN cDNA 9330133O14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442309
  NCBI Gene: 100689703
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:123170395-123173215 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 71.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442309	lncRNA gene	Chr8:123170365-123173215 (+)
129S1/SvImJ	ENSMUSG00200043517	lncRNA gene	Chr8:117501641-117504485 (+)
A/J	ENSMUSG00195027411	lncRNA gene	Chr8:117791891-117794749 (+)
AKR/J	ENSMUSG00220044666	lncRNA gene	Chr8:117983063-117985919 (+)
BALB/cJ	ENSMUSG00180030228	lncRNA gene	Chr8:117837932-117840788 (+)
C3H/HeJ	ENSMUSG00175033645	lncRNA gene	Chr8:117894808-117897663 (+)
C57BL/6NJ	ENSMUSG00215036536	lncRNA gene	Chr8:117476329-117479182 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036923	lncRNA gene	Chr8:117222967-117225850 (+)
CBA/J	ENSMUSG00210039669	lncRNA gene	Chr8:117828800-117831653 (+)
DBA/2J	ENSMUSG00185038437	lncRNA gene	Chr8:123933725-123936575 (+)
FVB/NJ	ENSMUSG00205036875	lncRNA gene	Chr8:116795024-116797869 (+)
JF1/MsJ	ENSUMUG00000039637	lncRNA gene	Chr8:126234342-126237210 (+)
LP/J	ENSMUSG00230031743	lncRNA gene	Chr8:127553090-127555934 (+)
NOD/ShiLtJ	ENSMUSG00190021009	lncRNA gene	Chr8:117929354-117932198 (+)
NZO/HlLtJ	ENSMUSG00225043971	lncRNA gene	Chr8:130934202-130937053 (+)
PWK/PhJ	ENSLUMG00010039267	lncRNA gene	Chr8:117639203-117642045 (+)
SPRET/EiJ	ENSMSPG00010040250	lncRNA gene	Chr8:119830864-119833703 (+)
WSB/EiJ	ENSIUOG00005030292	lncRNA gene	Chr8:118623696-118626547 (+)

Homology

• Gene Tree
  9330133O14Rik
  

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  6

• Other Mouse Links
  Allen Institute
  GEO

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000121107 (Evidence)
• NCBI Gene
  100689703

Representative Sequences			Length	Strain/Species
genomic	100689703	NCBI Gene Model | MGI Sequence Detail	2821	C57BL/6J
transcript	NR_045696	RefSeq | MGI Sequence Detail	2836	ZRU/MplStud
polypeptide	Q8C3M0	UniProt | EBI | MGI Sequence Detail	112	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 3

References

• Summaries
  All 11
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9330133O14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79868	Chr8:123170374-123170398 (+)	-9 bp
Tssr79869	Chr8:123170401-123170460 (+)	36 bp
Tssr79870	Chr8:123170795-123170798 (+)	402 bp