9630002D21Rik Gene Detail

Summary

• Symbol
  9630002D21Rik
• Name
  RIKEN cDNA 9630002D21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442274
  NCBI Gene: 319560
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:71624503-71765597 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  4763 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442274	lncRNA gene	Chr12:71624315-71765597 (+)
129S1/SvImJ	ENSMUSG00200032897	lncRNA gene	Chr12:63535145-63676899 (+)
A/J	ENSMUSG00195015749	lncRNA gene	Chr12:66241301-66383068 (+)
AKR/J	ENSMUSG00220015122	lncRNA gene	Chr12:64043313-64184268 (+)
BALB/cJ	ENSMUSG00180034770	lncRNA gene	Chr12:65240341-65382101 (+)
C3H/HeJ	ENSMUSG00175029259	lncRNA gene	Chr12:68362913-68509003 (+)
C57BL/6NJ	ENSMUSG00215035142	lncRNA gene	Chr12:64614625-64755585 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036618	lncRNA gene	Chr12:64551764-64685968 (+)
CBA/J	ENSMUSG00210032149	lncRNA gene	Chr12:64804601-64946354 (+)
DBA/2J	ENSMUSG00185004907	lncRNA gene	Chr12:66703891-66844782 (+)
FVB/NJ	ENSMUSG00205032620	lncRNA gene	Chr12:64432689-64568196 (+)
JF1/MsJ	ENSUMUG00000022772	lncRNA gene	Chr12:70661005-70795167 (+)
LP/J	ENSMUSG00230022832	lncRNA gene	Chr12:73671214-73812965 (+)
NOD/ShiLtJ	ENSMUSG00190012607	lncRNA gene	Chr12:63865638-64012346 (+)
NZO/HlLtJ	ENSMUSG00225038486	lncRNA gene	Chr12:75729150-75864401 (+)
PWK/PhJ	ENSLUMG00010033333	lncRNA gene	Chr12:64718112-64859550 (+)
SPRET/EiJ	ENSMSPG00010029258	lncRNA gene	Chr12:66416565-66553523 (+)
WSB/EiJ	ENSIUOG00005012422	lncRNA gene	Chr12:64496552-64632490 (+)

Homology

• Gene Tree
  9630002D21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9630002D21Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  598
• Tissues
  1
• cDNA Data
  3
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  64
• RefSeq
  7

• Ensembl
  ENSMUSG00000114028 (Evidence)
• NCBI Gene
  319560

Representative Sequences			Length	Strain/Species
genomic	319560	NCBI Gene Model | MGI Sequence Detail	141095	C57BL/6J
transcript	AK082302	GenBank | ENA | DDBJ | MGI Sequence Detail	2347	C57BL/6J

Molecular
Reagents

• All nucleic 4

  cDNA 3

  Primer pair 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:284183 George MR, et al., Minimal in vivo requirements for developmentally regulated cardiac long intergenic non-coding RNAs. Development. 2019 Dec 9;146(23):dev185314