A930012O16Rik Gene Detail

Summary

• Symbol
  A930012O16Rik
• Name
  RIKEN cDNA A930012O16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442255
  NCBI Gene: 227923
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:57125529-57128670 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 31.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442255	lncRNA gene	Chr2:57125529-57128670 (-)
129S1/SvImJ	ENSMUSG00200003042	lncRNA gene	Chr2:54183172-54185453 (-)
129S1/SvImJ	ENSMUSG00200002427	protein coding gene	Chr2:54183166-54185349 (-)
A/J	ENSMUSG00195005248	lncRNA gene	Chr2:54303547-54305828 (-)
A/J	ENSMUSG00195005054	protein coding gene	Chr2:54303541-54305724 (-)
AKR/J	ENSMUSG00220007378	lncRNA gene	Chr2:54405527-54407808 (-)
AKR/J	ENSMUSG00220007337	protein coding gene	Chr2:54405521-54407704 (-)
BALB/cJ	ENSMUSG00180019806	protein coding gene	Chr2:54265842-54268025 (-)
BALB/cJ	ENSMUSG00180021050	lncRNA gene	Chr2:54265848-54268129 (-)
C3H/HeJ	ENSMUSG00175012529	protein coding gene	Chr2:54328625-54330808 (-)
C3H/HeJ	ENSMUSG00175014174	lncRNA gene	Chr2:54328631-54330912 (-)
C57BL/6NJ	ENSMUSG00215009207	lncRNA gene	Chr2:54314472-54316753 (-)
C57BL/6NJ	ENSMUSG00215006687	protein coding gene	Chr2:54314466-54316649 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013554	unclassified non-coding RNA gene	Chr2:52186699-52188978 (-)
CAST/EiJ	ENSTCUG00005023303	lncRNA gene	Chr2:53661082-53663366 (-)
CBA/J	ENSMUSG00210034701	lncRNA gene	Chr2:54348141-54350422 (-)
CBA/J	ENSMUSG00210034006	protein coding gene	Chr2:54348135-54350318 (-)
DBA/2J	ENSMUSG00185007441	protein coding gene	Chr2:54204032-54206215 (-)
DBA/2J	ENSMUSG00185008646	lncRNA gene	Chr2:54204038-54206319 (-)
FVB/NJ	ENSMUSG00205020990	lncRNA gene	Chr2:53848117-53850398 (-)
FVB/NJ	ENSMUSG00205016497	protein coding gene	Chr2:53848111-53850294 (-)
JF1/MsJ	ENSUMUG00000023367	lncRNA gene	Chr2:53898850-53901139 (-)
LP/J	ENSMUSG00230001832	lncRNA gene	Chr2:56072844-56075125 (-)
LP/J	ENSMUSG00230001242	protein coding gene	Chr2:56072838-56075021 (-)
NOD/ShiLtJ	ENSMUSG00190043923	protein coding gene	Chr2:54285487-54287967 (-)
NOD/ShiLtJ	ENSMUSG00190044301	lncRNA gene	Chr2:54285493-54287774 (-)
NZO/HlLtJ	ENSMUSG00225001145	lncRNA gene	Chr2:63779714-63781995 (-)
PWK/PhJ	ENSLUMG00010005522	lncRNA gene	Chr2:54056499-54058796 (-)
SPRET/EiJ	ENSMSPG00010011989	lncRNA gene	Chr2:55135434-55137731 (-)
WSB/EiJ	ENSIUOG00005028321	lncRNA gene	Chr2:54283055-54285336 (-)

Homology

• Gene Tree
  A930012O16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  5
• Genomic Mutations
  1 involving A930012O16Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• UniProt
  1

• Ensembl
  ENSMUSG00000054181 (Evidence)
• NCBI Gene
  227923

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000054181	Ensembl Gene Model | MGI Sequence Detail	3142	C57BL/6J
transcript	ENSMUST00000156418	Ensembl | MGI Sequence Detail	2251	Not Applicable
polypeptide	Q8C8V0	UniProt | EBI | MGI Sequence Detail	120	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 4
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for A930012O16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr24124	Chr2:57128770-57128776 (-)	-103 bp
Tssr24123	Chr2:57128322-57128358 (-)	330 bp