9930038B18Rik Gene Detail

Summary

• Symbol
  9930038B18Rik
• Name
  RIKEN cDNA 9930038B18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442156
  NCBI Gene: 319503
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:8926509-8943445 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 3.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  578 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442156	lncRNA gene	Chr12:8923187-8943473 (-)
129S1/SvImJ	ENSMUSG00200024571	lncRNA gene	Chr12:5894415-5914703 (-)
129S1/SvImJ	ENSMUSG00200023593	protein coding gene	Chr12:5896963-5914704 (-)
A/J	ENSMUSG00195016498	lncRNA gene	Chr12:5943292-5963605 (-)
AKR/J	ENSMUSG00220032251	lncRNA gene	Chr12:5971810-5992108 (-)
AKR/J	ENSMUSG00220025886	protein coding gene	Chr12:5974358-5992109 (-)
BALB/cJ	ENSMUSG00180016084	lncRNA gene	Chr12:5935832-5956147 (-)
C3H/HeJ	ENSMUSG00175009464	protein coding gene	Chr12:5927161-5944908 (-)
C3H/HeJ	ENSMUSG00175009718	lncRNA gene	Chr12:5924613-5944907 (-)
C57BL/6NJ	ENSMUSG00215022442	lncRNA gene	Chr12:5759133-5779430 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004848	lincRNA gene	Chr12:5589510-5593802 (-)
CAST/EiJ	ENSTCUG00005023176	lncRNA gene	Chr12:5617583-5637911 (-)
CBA/J	ENSMUSG00210013026	protein coding gene	Chr12:5957919-5975664 (-)
CBA/J	ENSMUSG00210013699	lncRNA gene	Chr12:5955371-5975663 (-)
DBA/2J	ENSMUSG00185021583	lncRNA gene	Chr12:5898170-5918461 (-)
DBA/2J	ENSMUSG00185019978	protein coding gene	Chr12:5900718-5918462 (-)
FVB/NJ	ENSMUSG00205003291	protein coding gene	Chr12:5657323-5675067 (-)
FVB/NJ	ENSMUSG00205003806	lncRNA gene	Chr12:5654775-5675066 (-)
JF1/MsJ	ENSUMUG00000036106	lncRNA gene	Chr12:5857259-5877580 (-)
LP/J	ENSMUSG00230012738	lncRNA gene	Chr12:7728097-7748386 (-)
LP/J	ENSMUSG00230010634	protein coding gene	Chr12:7730645-7748387 (-)
NOD/ShiLtJ	ENSMUSG00190008027	lncRNA gene	Chr12:7142342-7162627 (-)
NOD/ShiLtJ	ENSMUSG00190007880	protein coding gene	Chr12:7144890-7162628 (-)
NZO/HlLtJ	ENSMUSG00225017276	protein coding gene	Chr12:9809874-9827615 (-)
NZO/HlLtJ	ENSMUSG00225019585	lncRNA gene	Chr12:9807326-9827614 (-)
PWK/PhJ	ENSLUMG00010017585	lncRNA gene	Chr12:5594864-5615193 (-)
SPRET/EiJ	ENSMSPG00010005046	lncRNA gene	Chr12:6203945-6224395 (-)
WSB/EiJ	ENSIUOG00005002340	lncRNA gene	Chr12:5932135-5952706 (-)

Homology

• Gene Tree
  9930038B18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000042976 (Evidence)
• NCBI Gene
  319503

Representative Sequences			Length	Strain/Species
genomic	319503	NCBI Gene Model | MGI Sequence Detail	16937	C57BL/6J
transcript	AK037014	GenBank | ENA | DDBJ | MGI Sequence Detail	3871	C57BL/6J
polypeptide	Q8BGP8	UniProt | EBI | MGI Sequence Detail	149	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582