B230208B08Rik Gene Detail

Summary

• Symbol
  B230208B08Rik
• Name
  RIKEN cDNA B230208B08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442149
  NCBI Gene: 102634132
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:78130261-78133841 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 37.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  227 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442149	lncRNA gene	Chr4:78130192-78145631 (+)
129S1/SvImJ	ENSMUSG00200000855	lncRNA gene	Chr4:73074040-73077703 (+)
A/J	ENSMUSG00195006193	lncRNA gene	Chr4:73615457-73619120 (+)
AKR/J	ENSMUSG00220007998	lncRNA gene	Chr4:73035464-73039118 (+)
BALB/cJ	ENSMUSG00180008354	lncRNA gene	Chr4:72575551-72579214 (+)
C3H/HeJ	ENSMUSG00175004119	lncRNA gene	Chr4:73536347-73540001 (+)
C57BL/6NJ	ENSMUSG00215002344	lncRNA gene	Chr4:73486753-73490407 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013680	unclassified non-coding RNA gene	Chr4:71215859-71218070 (+)
CAST/EiJ	ENSTCUG00005000906	lncRNA gene	Chr4:73092089-73095772 (+)
CBA/J	ENSMUSG00210001264	lncRNA gene	Chr4:73119235-73122889 (+)
DBA/2J	ENSMUSG00185000781	lncRNA gene	Chr4:73666807-73670461 (+)
FVB/NJ	ENSMUSG00205001500	lncRNA gene	Chr4:71897700-71901354 (+)
JF1/MsJ	ENSUMUG00000031529	lncRNA gene	Chr4:74165175-74168838 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190000999	lncRNA gene	Chr4:72546905-72550559 (+)
NZO/HlLtJ	ENSMUSG00225028029	lncRNA gene	Chr4:82193653-82197308 (+)
PWK/PhJ	ENSLUMG00010001648	lncRNA gene	Chr4:71922402-71926063 (+)
SPRET/EiJ	ENSMSPG00010007844	lncRNA gene	Chr4:73426436-73430057 (+)
WSB/EiJ	ENSIUOG00005009787	lncRNA gene	Chr4:72898749-72902401 (+)

Homology

• Gene Tree
  B230208B08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving B230208B08Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000092492 (Evidence)
• NCBI Gene
  102634132

Representative Sequences			Length	Strain/Species
genomic	102634132	NCBI Gene Model | MGI Sequence Detail	3581	C57BL/6J
transcript	NR_190163	RefSeq | MGI Sequence Detail	1762	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for B230208B08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37650	Chr4:78130251-78130286 (+)	8 bp