E230020A03Rik Gene Detail

Summary

• Symbol
  E230020A03Rik
• Name
  RIKEN cDNA E230020A03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442139
  NCBI Gene: 319497
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:36426602-36428987 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442139	lncRNA gene	Chr7:36426602-36428987 (+)
129S1/SvImJ	ENSMUSG00200026965	unclassified gene	Chr7:25176104-25178486 (+)
A/J	ENSMUSG00195050641	unclassified gene	Chr7:28154533-28156915 (+)
AKR/J	ENSMUSG00220032312	unclassified gene	Chr7:15971955-15974337 (+)
BALB/cJ	ENSMUSG00180021013	unclassified gene	Chr7:25711587-25713969 (+)
C3H/HeJ	ENSMUSG00175039710	unclassified gene	Chr7:26220252-26222634 (+)
C57BL/6NJ	ENSMUSG00215030545	unclassified gene	Chr7:25583556-25585941 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001862	unclassified gene	Chr7:35939560-35941938 (+)
CAST/EiJ	ENSTCUG00005049222	unclassified gene	Chr7:27339224-27341603 (+)
CBA/J	ENSMUSG00210028035	unclassified gene	Chr7:26240456-26242838 (+)
DBA/2J	ENSMUSG00185054807	unclassified gene	Chr7:29010709-29013088 (+)
FVB/NJ	ENSMUSG00205020369	unclassified gene	Chr7:25984547-25986930 (+)
JF1/MsJ	ENSUMUG00000037788	unclassified gene	Chr7:33482372-33484751 (+)
LP/J	ENSMUSG00230015197	unclassified gene	Chr7:34685875-34688257 (+)
NOD/ShiLtJ	ENSMUSG00190008836	unclassified gene	Chr7:25837276-25839658 (+)
NZO/HlLtJ	ENSMUSG00225010002	unclassified gene	Chr7:33046484-33048863 (+)
PWK/PhJ	ENSLUMG00010022235	unclassified gene	Chr7:25435527-25437912 (+)
SPRET/EiJ	ENSMSPG00010005624	unclassified gene	Chr7:25467590-25469969 (+)
WSB/EiJ	ENSIUOG00005009388	unclassified gene	Chr7:26043835-26046217 (+)

Homology

• Gene Tree
  E230020A03Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000104420 (Evidence)
• NCBI Gene
  319497

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104420	Ensembl Gene Model | MGI Sequence Detail	2386	C57BL/6J
transcript	AK084995	GenBank | ENA | DDBJ | MGI Sequence Detail	2389	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for E230020A03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2204	Chr7:36428867-36428872 (+)	2,268 bp
Tssr65921	Chr7:36428912-36428923 (+)	2,316 bp