A230028O05Rik Gene Detail

Summary

• Symbol
  A230028O05Rik
• Name
  RIKEN cDNA A230028O05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442126
  NCBI Gene: 319487
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:24878389-24887808 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 16.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  346 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442126	lncRNA gene	Chr16:24877461-24887808 (+)
129S1/SvImJ	ENSMUSG00200036157	lncRNA gene	Chr16:21882586-21892270 (+)
A/J	ENSMUSG00195029489	lncRNA gene	Chr16:21437183-21446865 (+)
AKR/J	ENSMUSG00220033911	lncRNA gene	Chr16:21756656-21766343 (+)
BALB/cJ	ENSMUSG00180030462	lncRNA gene	Chr16:21677796-21687482 (+)
C3H/HeJ	ENSMUSG00175040903	lncRNA gene	Chr16:21831311-21840983 (+)
C57BL/6NJ	ENSMUSG00215021976	lncRNA gene	Chr16:21549838-21559521 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005136	lincRNA gene	Chr16:22274064-22283388 (+)
CAST/EiJ	ENSTCUG00005038409	lncRNA gene	Chr16:22157847-22167536 (+)
CBA/J	ENSMUSG00210039766	lncRNA gene	Chr16:21852887-21862573 (+)
DBA/2J	ENSMUSG00185020174	lncRNA gene	Chr16:21791700-21801384 (+)
FVB/NJ	ENSMUSG00205025231	lncRNA gene	Chr16:21783862-21793540 (+)
JF1/MsJ	ENSUMUG00000040928	lncRNA gene	Chr16:22032337-22042020 (+)
LP/J	ENSMUSG00230035210	lncRNA gene	Chr16:24361887-24371569 (+)
NOD/ShiLtJ	ENSMUSG00190034332	lncRNA gene	Chr16:21919708-21929396 (+)
NZO/HlLtJ	ENSMUSG00225039677	lncRNA gene	Chr16:27613099-27622791 (+)
PWK/PhJ	ENSLUMG00010035660	lncRNA gene	Chr16:21828599-21838319 (+)
SPRET/EiJ	ENSMSPG00010020032	lncRNA gene	Chr16:21740418-21750093 (+)
WSB/EiJ	ENSIUOG00005034580	lncRNA gene	Chr16:22045175-22054849 (+)

Homology

• Gene Tree
  A230028O05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000096960 (Evidence)
• NCBI Gene
  319487

Representative Sequences			Length	Strain/Species
genomic	319487	NCBI Gene Model | MGI Sequence Detail	9420	C57BL/6J
transcript	NR_040374	RefSeq | MGI Sequence Detail	2793	C57BL/6

Molecular
Reagents

• All nucleic 4

  Genomic 2

  cDNA 2

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A230028O05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137789	Chr16:24878111-24878130 (+)	-268 bp
Tssr137790	Chr16:24878655-24878700 (+)	289 bp