A430057M04Rik MGI Mouse Gene Detail - MGI:2442125

Symbol

A430057M04Rik
Name

RIKEN cDNA A430057M04 gene

Feature Type

protein coding gene

BioType Conflict
IDs

MGI:2442125
NCBI Gene: 319486
Alliance

genome feature page
Transcription Start Sites

3 TSS

Sequence Map

Chr14:21897646-21906994 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 14, 11.92 cM
Mapping Data

1 experiment

SNPs within 2kb

409 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442125	protein coding gene	Chr14:21897615-21906999 (+)
129S1/SvImJ	ENSMUSG00200014765	protein coding gene	Chr14:13696227-13703666 (+)
129S1/SvImJ	ENSMUSG00200015357	lncRNA gene	Chr14:13695444-13704853 (+)
A/J	ENSMUSG00195022459	lncRNA gene	Chr14:14770384-14779737 (+)
A/J	ENSMUSG00195019582	protein coding gene	Chr14:14771272-14777467 (+)
AKR/J	ENSMUSG00220024452	protein coding gene	Chr14:13901847-13908042 (+)
AKR/J	ENSMUSG00220029901	lncRNA gene	Chr14:13900959-13910312 (+)
BALB/cJ	ENSMUSG00180041038	lncRNA gene	Chr14:13875185-13884596 (+)
BALB/cJ	ENSMUSG00180037060	protein coding gene	Chr14:13875966-13883409 (+)
C3H/HeJ	ENSMUSG00175021855	protein coding gene	Chr14:13927083-13933278 (+)
C3H/HeJ	ENSMUSG00175023549	lncRNA gene	Chr14:13926195-13935548 (+)
C57BL/6NJ	ENSMUSG00215023078	protein coding gene	Chr14:14116779-14122974 (+)
C57BL/6NJ	ENSMUSG00215035828	lncRNA gene	Chr14:14115891-14125244 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013402	unclassified non-coding RNA gene	Chr14:14626636-14635942 (+)
CAST/EiJ	ENSTCUG00005034931	lncRNA gene	Chr14:14047304-14056738 (+)
CBA/J	ENSMUSG00210025372	protein coding gene	Chr14:14169259-14176696 (+)
CBA/J	ENSMUSG00210027296	lncRNA gene	Chr14:14168476-14177883 (+)
DBA/2J	ENSMUSG00185039774	lncRNA gene	Chr14:18453516-18462925 (+)
DBA/2J	ENSMUSG00185033447	protein coding gene	Chr14:18454299-18461738 (+)
FVB/NJ	ENSMUSG00205039742	lncRNA gene	Chr14:14008902-14018311 (+)
FVB/NJ	ENSMUSG00205037438	protein coding gene	Chr14:14009685-14017124 (+)
JF1/MsJ	ENSUMUG00000051283	lncRNA gene	Chr14:25664940-25674318 (+)
LP/J	ENSMUSG00230041306	lncRNA gene	Chr14:25735271-25744680 (+)
LP/J	ENSMUSG00230039638	protein coding gene	Chr14:25736054-25743493 (+)
NOD/ShiLtJ	ENSMUSG00190029634	protein coding gene	Chr14:14168114-14175553 (+)
NOD/ShiLtJ	ENSMUSG00190039786	lncRNA gene	Chr14:14167331-14176740 (+)
NZO/HlLtJ	ENSMUSG00225036366	protein coding gene	Chr14:19957134-19964577 (+)
NZO/HlLtJ	ENSMUSG00225036816	lncRNA gene	Chr14:19956353-19965764 (+)
PWK/PhJ	ENSLUMG00010022858	lncRNA gene	Chr14:2303149-2312524 (+)
SPRET/EiJ	ENSMSPG00010034527	lncRNA gene	Chr14:15796885-15806307 (+)
WSB/EiJ	ENSIUOG00005033302	lncRNA gene	Chr14:13976339-13985703 (+)

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Gene Tree

A430057M04Rik

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

8

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

47
RefSeq

2
UniProt

1

Ensembl

ENSMUSG00000090564 (Evidence)
NCBI Gene

319486

			Length	Strain/Species	Flank
genomic	319486	NCBI Gene Model \| MGI Sequence Detail	9349	C57BL/6J	± kb
transcript	NM_176925	RefSeq \| MGI Sequence Detail	4699	C57BL/6
polypeptide	NP_795899	RefSeq \| MGI Sequence Detail	158	C57BL/6

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UniProt

1 Sequence

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All nucleic 8

cDNA 8

Microarray probesets 1

Summaries

All 12
Earliest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A430057M04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124459	Chr14:21898512-21898524 (+)	872 bp
Tssr124460	Chr14:21898534-21898555 (+)	899 bp
Tssr124461	Chr14:21898578-21898613 (+)	950 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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