Rapgef4os3 Gene Detail

Summary

• Symbol
  Rapgef4os3
• Name
  Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 3
• Synonyms
  4732447D17Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:2442080
  NCBI Gene: 380612
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:72075309-72079319 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 43.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442080	antisense lncRNA gene	Chr2:72075309-72079319 (-)
129S1/SvImJ	ENSMUSG00200037070	lncRNA gene	Chr2:69148466-69152480 (-)
A/J	ENSMUSG00195023397	lncRNA gene	Chr2:69295054-69299065 (-)
AKR/J	ENSMUSG00220040681	lncRNA gene	Chr2:69259703-69263713 (-)
BALB/cJ	ENSMUSG00180043201	lncRNA gene	Chr2:69248827-69252837 (-)
C3H/HeJ	ENSMUSG00175037582	lncRNA gene	Chr2:69363838-69367848 (-)
C57BL/6NJ	ENSMUSG00215032845	lncRNA gene	Chr2:69185768-69189778 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003202	antisense lncRNA gene	Chr2:66819998-66823608 (-)
CAST/EiJ	ENSTCUG00005009272	lncRNA gene	Chr2:68671407-68675308 (-)
CBA/J	ENSMUSG00210038551	lncRNA gene	Chr2:69406621-69410631 (-)
DBA/2J	ENSMUSG00185041779	lncRNA gene	Chr2:69242358-69246368 (-)
FVB/NJ	ENSMUSG00205039128	lncRNA gene	Chr2:68705114-68709124 (-)
JF1/MsJ	ENSUMUG00000007039	lncRNA gene	Chr2:68904671-68908647 (-)
LP/J	ENSMUSG00230022752	lncRNA gene	Chr2:71048314-71052324 (-)
NOD/ShiLtJ	ENSMUSG00190040522	lncRNA gene	Chr2:69327900-69331910 (-)
NZO/HlLtJ	ENSMUSG00225015232	lncRNA gene	Chr2:78791793-78795803 (-)
PWK/PhJ	ENSLUMG00010034967	lncRNA gene	Chr2:69135539-69139509 (-)
SPRET/EiJ	ENSMSPG00010036972	lncRNA gene	Chr2:70538589-70542474 (-)
WSB/EiJ	ENSIUOG00005019985	lncRNA gene	Chr2:69369912-69373909 (-)

Homology

• Gene Tree
  Rapgef4os3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  15 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Targeted
  6
• Genomic Mutations
  7 involving Rapgef4os3
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000086231 (Evidence)
• NCBI Gene
  380612

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086231	Ensembl Gene Model | MGI Sequence Detail	4011	C57BL/6J
transcript	ENSMUST00000132792	Ensembl | MGI Sequence Detail	3485	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 22

  Phenotypes 15
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:373797 Hintermann A, et al., Co-option of an ancestral cloacal regulatory landscape during digit evolution. Nature. 2025 Sep 17;