C730034F03Rik Gene Detail

Summary

• Symbol
  C730034F03Rik
• Name
  RIKEN cDNA C730034F03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441921
  NCBI Gene: 105246016
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr15:89314218-89331082 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 44.90 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  467 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441921	lncRNA gene	Chr15:89313682-89331590 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0022236	protein coding gene	Chr15:90625294-90626573 (+)
A/J	MGP_AJ_G0022195	protein coding gene	Chr15:87160100-87161379 (+)
AKR/J	MGP_AKRJ_G0022170	protein coding gene	Chr15:89741943-89745193 (+)
BALB/cJ	MGP_BALBcJ_G0022201	protein coding gene	Chr15:87265096-87266375 (+)
C3H/HeJ	MGP_C3HHeJ_G0021971	protein coding gene	Chr15:89740694-89741973 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0022646	protein coding gene	Chr15:93926031-93927285 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020171	protein coding gene	Chr15:83384388-83385875 (+)
CAST/EiJ	MGP_CASTEiJ_G0021493	protein coding gene	Chr15:90520079-90521358 (+)
CBA/J	MGP_CBAJ_G0021938	protein coding gene	Chr15:97105911-97107190 (+)
DBA/2J	MGP_DBA2J_G0022065	protein coding gene	Chr15:86610859-86612138 (+)
FVB/NJ	MGP_FVBNJ_G0022044	protein coding gene	Chr15:85678008-85679287 (+)
LP/J	MGP_LPJ_G0022136	protein coding gene	Chr15:90782963-90784242 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022064	protein coding gene	Chr15:101504541-101505820 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022661	protein coding gene	Chr15:89778746-89780025 (+)
PWK/PhJ	MGP_PWKPhJ_G0021234	protein coding gene	Chr15:86674184-86675586 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0021068	protein coding gene	Chr15:89527747-89529005 (+)
WSB/EiJ	MGP_WSBEiJ_G0021542	protein coding gene	Chr15:90268933-90270167 (+)

Homology

• Gene Tree
  C730034F03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  15 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving C730034F03Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000079242 (Evidence)
• NCBI Gene
  105246016

Representative Sequences			Length	Strain/Species
genomic	105246016	NCBI Gene Model | MGI Sequence Detail	16865	C57BL/6J
transcript	AK083297	GenBank | ENA | DDBJ | MGI Sequence Detail	3284	C57BL/6J
polypeptide	Q8BGL5	UniProt | EBI | MGI Sequence Detail	111	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  Genomic 2

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 27

  Phenotypes 15
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for C730034F03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132672	Chr15:89313763-89313782 (+)	-445 bp
Tssr132673	Chr15:89314262-89314267 (+)	47 bp