B430119L08Rik Gene Detail

Summary

• Symbol
  B430119L08Rik
• Name
  RIKEN cDNA B430119L08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441857
  NCBI Gene: 319323
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:103862156-103865043 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 52.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441857	lncRNA gene	Chr12:103862156-103865043 (+)
129S1/SvImJ	ENSMUSG00200030035	lncRNA gene	Chr12:95547066-95549960 (+)
129S1/SvImJ	ENSMUSG00200028657	lncRNA gene	Chr12:95637856-95640747 (+)
A/J	ENSMUSG00195022920	lncRNA gene	Chr12:98147692-98150583 (+)
A/J	ENSMUSG00195022231	lncRNA gene	Chr12:98189037-98191924 (+)
AKR/J	ENSMUSG00220045087	lncRNA gene	Chr12:96018599-96021490 (+)
BALB/cJ	ENSMUSG00180037507	lncRNA gene	Chr12:97352322-97355213 (+)
BALB/cJ	ENSMUSG00180039984	lncRNA gene	Chr12:97264610-97267510 (+)
C3H/HeJ	ENSMUSG00175037166	lncRNA gene	Chr12:99960409-99963300 (+)
C3H/HeJ	ENSMUSG00175037137	lncRNA gene	Chr12:100001768-100004655 (+)
C57BL/6NJ	ENSMUSG00215042720	lncRNA gene	Chr12:96622341-96625232 (+)
C57BL/6NJ	ENSMUSG00215042439	lncRNA gene	Chr12:96663689-96666576 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002801	antisense lncRNA gene	Chr12:98378659-98381516 (+)
CAST/EiJ	ENSTCUG00005022519	lncRNA gene	Chr12:96060828-96062914 (+)
CBA/J	ENSMUSG00210015252	lncRNA gene	Chr12:96956564-96959464 (+)
CBA/J	ENSMUSG00210015121	lncRNA gene	Chr12:97044267-97047158 (+)
DBA/2J	ENSMUSG00185048329	lncRNA gene	Chr12:98722624-98725524 (+)
DBA/2J	ENSMUSG00185046847	lncRNA gene	Chr12:98810337-98813228 (+)
FVB/NJ	ENSMUSG00205020860	lncRNA gene	Chr12:96030896-96033787 (+)
FVB/NJ	ENSMUSG00205022945	lncRNA gene	Chr12:95938806-95941700 (+)
JF1/MsJ	ENSUMUG00000042385	lncRNA gene	Chr12:103515584-103518478 (+)
JF1/MsJ	ENSUMUG00000035005	lncRNA gene	Chr12:103556911-103559798 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190041387	lncRNA gene	Chr12:89210608-89213508 (-)
NOD/ShiLtJ	ENSMUSG00190034849	lncRNA gene	Chr12:89165687-89168578 (-)
NZO/HlLtJ	ENSMUSG00225039918	lncRNA gene	Chr12:107586983-107589874 (+)
NZO/HlLtJ	ENSMUSG00225039097	lncRNA gene	Chr12:107628330-107631217 (+)
PWK/PhJ	ENSLUMG00010014385	lncRNA gene	Chr12:97018806-97018974 (+)
PWK/PhJ	ENSLUMG00010014378	lncRNA gene	Chr12:96913320-96916221 (+)
SPRET/EiJ	ENSMSPG00010020584	lncRNA gene	Chr12:99435777-99438662 (+)
WSB/EiJ	ENSIUOG00005010469	lncRNA gene	Chr12:96043038-96045929 (+)
WSB/EiJ	ENSIUOG00005010552	lncRNA gene	Chr12:95952204-95955098 (+)

Homology

• Gene Tree
  B430119L08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving B430119L08Rik
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000086432 (Evidence)
• NCBI Gene
  319323

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086432	Ensembl Gene Model | MGI Sequence Detail	2888	C57BL/6J
transcript	ENSMUST00000130054	Ensembl | MGI Sequence Detail	1994	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for B430119L08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3929	Chr12:103861340-103861346 (+)	-813 bp
Tssr114819	Chr12:103861346-103861387 (+)	-789 bp