A930001C03Rik Gene Detail

Summary

• Symbol
  A930001C03Rik
• Name
  RIKEN cDNA A930001C03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441838
  NCBI Gene: 319314
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:4489351-4498353 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 4.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  293 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441838	lncRNA gene	Chr19:4489015-4499001 (+)
129S1/SvImJ	ENSMUSG00200052500	lncRNA gene	Chr19:1249620-1259601 (+)
A/J	ENSMUSG00195053510	lncRNA gene	Chr19:1640615-1650594 (+)
AKR/J	ENSMUSG00220051113	lncRNA gene	Chr19:1413538-1423509 (+)
BALB/cJ	ENSMUSG00180052621	lncRNA gene	Chr19:2015261-2025234 (+)
C3H/HeJ	ENSMUSG00175015817	lncRNA gene	Chr19:1260006-1269979 (+)
C57BL/6NJ	ENSMUSG00215047160	lncRNA gene	Chr19:1487945-1497924 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013508	unclassified non-coding RNA gene	Chr19:1182862-1192491 (+)
CAST/EiJ	ENSTCUG00005043753	lncRNA gene	Chr19:1394600-1404653 (+)
CBA/J	ENSMUSG00210050175	lncRNA gene	Chr19:1259777-1269735 (+)
DBA/2J	ENSMUSG00185052274	lncRNA gene	Chr19:1636121-1646079 (+)
FVB/NJ	ENSMUSG00205053566	lncRNA gene	Chr19:1637879-1647846 (+)
JF1/MsJ	ENSUMUG00000056743	lncRNA gene	Chr19:1621725-1631814 (+)
LP/J	ENSMUSG00230054237	lncRNA gene	Chr19:2555750-2565730 (+)
NOD/ShiLtJ	ENSMUSG00190053400	lncRNA gene	Chr19:1181530-1191503 (+)
NZO/HlLtJ	ENSMUSG00225027189	lncRNA gene	Chr19:6264606-6274584 (+)
PWK/PhJ	ENSLUMG00010009015	lncRNA gene	Chr19:1398613-1408609 (+)
SPRET/EiJ	ENSMSPG00010051272	lncRNA gene	Chr19:1378580-1388548 (+)
WSB/EiJ	ENSIUOG00005051135	lncRNA gene	Chr19:1272167-1282320 (+)

Homology

• Gene Tree
  A930001C03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  2

• Ensembl
  ENSMUSG00000087132 (Evidence)
• NCBI Gene
  319314

Representative Sequences			Length	Strain/Species
genomic	319314	NCBI Gene Model | MGI Sequence Detail	9003	C57BL/6J
transcript	NR_045989	RefSeq | MGI Sequence Detail	1126	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for A930001C03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154318	Chr19:4489539-4489567 (+)	202 bp