A830012C17Rik Gene Detail

Summary

• Symbol
  A830012C17Rik
• Name
  RIKEN cDNA A830012C17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441830
  NCBI Gene: 319308
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:4148030-4181846 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 2.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  843 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441830	lncRNA gene	Chr4:4138321-4188703 (+)
129S1/SvImJ	ENSMUSG00200001318	lncRNA gene	Chr4:763832-814519 (+)
A/J	ENSMUSG00195002936	lncRNA gene	Chr4:1181712-1232436 (+)
AKR/J	ENSMUSG00220001309	lncRNA gene	Chr4:1003441-1069161 (+)
BALB/cJ	ENSMUSG00180004736	lncRNA gene	Chr4:760131-810822 (+)
C3H/HeJ	ENSMUSG00175017639	lncRNA gene	Chr4:1284239-1334924 (+)
C57BL/6NJ	ENSMUSG00215004536	lncRNA gene	Chr4:865694-916367 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013659	unclassified non-coding RNA gene	Chr4:624539-657951 (+)
CAST/EiJ	ENSTCUG00005026791	lncRNA gene	Chr4:1057959-1114377 (+)
CBA/J	ENSMUSG00210002644	lncRNA gene	Chr4:1024808-1075489 (+)
DBA/2J	ENSMUSG00185002563	lncRNA gene	Chr4:1146159-1196835 (+)
FVB/NJ	ENSMUSG00205003465	lncRNA gene	Chr4:793971-844646 (+)
JF1/MsJ	ENSUMUG00000002822	lncRNA gene	Chr4:1309266-1365634 (+)
LP/J	ENSMUSG00230008452	lncRNA gene	Chr4:4316878-4367563 (+)
NOD/ShiLtJ	ENSMUSG00190014143	lncRNA gene	Chr4:847148-897809 (+)
NZO/HlLtJ	ENSMUSG00225000839	lncRNA gene	Chr4:8295695-8346384 (+)
PWK/PhJ	ENSLUMG00010006031	lncRNA gene	Chr4:793099-850801 (+)
SPRET/EiJ	ENSMSPG00010003080	lncRNA gene	Chr4:956641-1006466 (+)
WSB/EiJ	ENSIUOG00005014426	lncRNA gene	Chr4:783286-833954 (+)

Homology

• Gene Tree
  A830012C17Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000085996 (Evidence)
• NCBI Gene
  319308

Representative Sequences			Length	Strain/Species
genomic	319308	NCBI Gene Model | MGI Sequence Detail	33817	C57BL/6J
transcript	AK043612	GenBank | ENA | DDBJ | MGI Sequence Detail	1666	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573