A430073I11Rik Gene Detail

Summary

• Symbol
  A430073I11Rik
• Name
  RIKEN cDNA A430073I11 gene
• Synonyms
  Gm37214

• Feature Type
  lncRNA gene
• IDs
  MGI:2441799
  NCBI Gene: 319287
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:183201586-183203121 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441799	lncRNA gene	Chr1:183201586-183203121 (+)
129S1/SvImJ	ENSMUSG00200023077	lncRNA gene	Chr1:180969524-180971095 (+)
A/J	ENSMUSG00195044606	lncRNA gene	Chr1:180554763-180556335 (+)
AKR/J	ENSMUSG00220020767	lncRNA gene	Chr1:179800239-179801797 (+)
BALB/cJ	ENSMUSG00180039895	lncRNA gene	Chr1:180620957-180622532 (+)
C3H/HeJ	ENSMUSG00175042510	lncRNA gene	Chr1:180796557-180798124 (+)
C57BL/6NJ	ENSMUSG00215029375	lncRNA gene	Chr1:180016137-180017697 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034437	sense intronic lncRNA gene	Chr1:173365323-173366794 (+)
CAST/EiJ	ENSTCUG00005044143	lncRNA gene	Chr1:178550862-178552476 (+)
CBA/J	ENSMUSG00210019260	lncRNA gene	Chr1:180447176-180448737 (+)
DBA/2J	ENSMUSG00185036175	lncRNA gene	Chr1:185066601-185068164 (+)
FVB/NJ	ENSMUSG00205034409	lncRNA gene	Chr1:179491160-179492717 (+)
JF1/MsJ	ENSUMUG00000006026	lncRNA gene	Chr1:184076031-184077631 (+)
LP/J	ENSMUSG00230024777	lncRNA gene	Chr1:184628684-184630258 (+)
NOD/ShiLtJ	ENSMUSG00190037934	lncRNA gene	Chr1:180471071-180472642 (+)
NZO/HlLtJ	ENSMUSG00225011644	lncRNA gene	Chr1:188375408-188377253 (+)
PWK/PhJ	ENSLUMG00010017143	lncRNA gene	Chr1:179322106-179323668 (+)
SPRET/EiJ	ENSMSPG00010035109	lncRNA gene	Chr1:182815276-182816059 (+)
WSB/EiJ	ENSIUOG00005011626	lncRNA gene	Chr1:179661750-179663306 (+)

Homology

• Gene Tree
  A430073I11Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000104022 (Evidence)
• NCBI Gene
  319287

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104022	Ensembl Gene Model | MGI Sequence Detail	1536	C57BL/6J
transcript	ENSMUST00000192860	Ensembl | MGI Sequence Detail	916	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5610442

References

• Summaries
  All 5
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A430073I11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr361	Chr1:183201581-183201590 (+)	0 bp