9530080O11Rik Gene Detail

Summary

• Symbol
  9530080O11Rik
• Name
  RIKEN cDNA 9530080O11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441751
  NCBI Gene: 319247
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:95847948-95855892 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 44.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  283 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441751	lncRNA gene	Chr4:95800860-95855892 (-)
129S1/SvImJ	ENSMUSG00200010595	lncRNA gene	Chr4:90822780-90830998 (-)
129S1/SvImJ	ENSMUSG00200009631	protein coding gene	Chr4:90766395-90831033 (-)
A/J	ENSMUSG00195008937	protein coding gene	Chr4:91362313-91370298 (-)
A/J	ENSMUSG00195009618	lncRNA gene	Chr4:91362317-91370263 (-)
AKR/J	ENSMUSG00220020155	lncRNA gene	Chr4:90810842-90818792 (-)
AKR/J	ENSMUSG00220019212	protein coding gene	Chr4:90753325-90818827 (-)
BALB/cJ	ENSMUSG00180006140	lncRNA gene	Chr4:90307877-90315827 (-)
BALB/cJ	ENSMUSG00180005905	protein coding gene	Chr4:90307873-90315862 (-)
C3H/HeJ	ENSMUSG00175007405	protein coding gene	Chr4:91268665-91276653 (-)
C3H/HeJ	ENSMUSG00175008187	lncRNA gene	Chr4:91268669-91276618 (-)
C57BL/6NJ	ENSMUSG00215020619	lncRNA gene	Chr4:91218116-91226063 (-)
C57BL/6NJ	ENSMUSG00215012325	protein coding gene	Chr4:91218112-91226098 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013689	unclassified non-coding RNA gene	Chr4:88151445-88159551 (-)
CAST/EiJ	ENSTCUG00005019676	lncRNA gene	Chr4:90598566-90606541 (-)
CBA/J	ENSMUSG00210016620	lncRNA gene	Chr4:90823684-90831636 (-)
CBA/J	ENSMUSG00210015999	protein coding gene	Chr4:90823680-90831671 (-)
DBA/2J	ENSMUSG00185003054	lncRNA gene	Chr4:91623157-91631108 (-)
DBA/2J	ENSMUSG00185002509	protein coding gene	Chr4:91623153-91631143 (-)
FVB/NJ	ENSMUSG00205014858	lncRNA gene	Chr4:89768709-89776657 (-)
FVB/NJ	ENSMUSG00205011879	protein coding gene	Chr4:89768705-89776692 (-)
JF1/MsJ	ENSUMUG00000003493	lncRNA gene	Chr4:91755768-91763758 (-)
LP/J	ENSMUSG00230023164	lncRNA gene	Chr4:94931761-94939978 (-)
LP/J	ENSMUSG00230018122	protein coding gene	Chr4:94875384-94940013 (-)
NOD/ShiLtJ	ENSMUSG00190017927	lncRNA gene	Chr4:90290881-90298834 (-)
NOD/ShiLtJ	ENSMUSG00190016407	protein coding gene	Chr4:90233368-90298869 (-)
NZO/HlLtJ	ENSMUSG00225003845	lncRNA gene	Chr4:100078555-100086495 (-)
NZO/HlLtJ	ENSMUSG00225002400	protein coding gene	Chr4:100078551-100086530 (-)
PWK/PhJ	ENSLUMG00010003650	lncRNA gene	Chr4:89476526-89484515 (-)
SPRET/EiJ	ENSMSPG00010015332	lncRNA gene	Chr4:91548643-91556050 (-)
WSB/EiJ	ENSIUOG00005012752	lncRNA gene	Chr4:90601661-90609606 (-)

Homology

• Gene Tree
  9530080O11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving 9530080O11Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  55
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000044125 (Evidence)
• NCBI Gene
  319247

Representative Sequences			Length	Strain/Species
genomic	319247	NCBI Gene Model | MGI Sequence Detail	7945	C57BL/6J
transcript	NR_045776	RefSeq | MGI Sequence Detail	1479	C57BL/6
polypeptide	Q8C582	UniProt | EBI | MGI Sequence Detail	122	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 9530080O11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42465	Chr4:95855242-95855254 (-)	644 bp