9530056E24Rik Gene Detail

Summary

• Symbol
  9530056E24Rik
• Name
  RIKEN cDNA 9530056E24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441750
  NCBI Gene: 319246
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:130365915-130369204 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441750	lncRNA gene	Chr2:130365915-130369204 (+)
129S1/SvImJ	ENSMUSG00200049365	unclassified gene	Chr2:127408634-127412021 (+)
A/J	ENSMUSG00195030814	unclassified gene	Chr2:127441885-127445175 (+)
AKR/J	ENSMUSG00220045913	unclassified gene	Chr2:127202203-127205585 (+)
BALB/cJ	ENSMUSG00180050466	unclassified gene	Chr2:127251636-127255142 (+)
C3H/HeJ	ENSMUSG00175046606	unclassified gene	Chr2:127789481-127792868 (+)
C57BL/6NJ	ENSMUSG00215034823	unclassified gene	Chr2:127289951-127293241 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040178	unclassified gene	Chr2:126560082-126563592 (+)
CBA/J	ENSMUSG00210035551	unclassified gene	Chr2:127646369-127649756 (+)
DBA/2J	ENSMUSG00185035935	unclassified gene	Chr2:127294826-127298115 (+)
FVB/NJ	ENSMUSG00205041800	unclassified gene	Chr2:126461486-126464872 (+)
JF1/MsJ	ENSUMUG00000027195	unclassified gene	Chr2:127105574-127108978 (+)
LP/J	ENSMUSG00230039176	unclassified gene	Chr2:129043847-129047230 (+)
NOD/ShiLtJ	ENSMUSG00190015413	unclassified gene	Chr2:127403870-127407226 (+)
NZO/HlLtJ	ENSMUSG00225027686	unclassified gene	Chr2:136952680-136956061 (+)
PWK/PhJ	ENSLUMG00010042761	unclassified gene	Chr2:127067436-127070961 (+)
SPRET/EiJ	ENSMSPG00010032507	unclassified gene	Chr2:129449701-129453064 (+)
WSB/EiJ	ENSIUOG00005045868	unclassified gene	Chr2:127225589-127228974 (+)

Homology

• Gene Tree
  9530056E24Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000115955 (Evidence)
• NCBI Gene
  319246

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115955	Ensembl Gene Model | MGI Sequence Detail	3290	C57BL/6J
transcript	AK035489	GenBank | ENA | DDBJ | MGI Sequence Detail	3288	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573