9430097D07Rik Gene Detail

Summary

• Symbol
  9430097D07Rik
• Name
  RIKEN cDNA 9430097D07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441749
  NCBI Gene: 319245
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:32464189-32465992 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 22.09 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441749	lncRNA gene	Chr2:32464189-32466294 (-)
129S1/SvImJ	ENSMUSG00200053553	lncRNA gene	Chr2:29436677-29438177 (-)
A/J	ENSMUSG00195050198	lncRNA gene	Chr2:29538072-29539572 (-)
AKR/J	ENSMUSG00220053879	lncRNA gene	Chr2:29655973-29657473 (-)
BALB/cJ	ENSMUSG00180054352	lncRNA gene	Chr2:29552722-29554222 (-)
C3H/HeJ	ENSMUSG00175053740	lncRNA gene	Chr2:29519153-29520653 (-)
C57BL/6NJ	ENSMUSG00215049705	lncRNA gene	Chr2:29584634-29586134 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023438	protein coding gene	Chr2:28441473-28443050 (-)
CAST/EiJ	ENSTCUG00005053408	lncRNA gene	Chr2:29265069-29266569 (-)
CBA/J	ENSMUSG00210018145	lncRNA gene	Chr2:29591686-29593186 (-)
DBA/2J	ENSMUSG00185053717	lncRNA gene	Chr2:29451334-29452834 (-)
FVB/NJ	ENSMUSG00205051504	lncRNA gene	Chr2:29298082-29299582 (-)
JF1/MsJ	ENSUMUG00000056305	lncRNA gene	Chr2:29337285-29338792 (-)
LP/J	ENSMUSG00230047360	lncRNA gene	Chr2:31371992-31373492 (-)
NOD/ShiLtJ	ENSMUSG00190053183	lncRNA gene	Chr2:29552478-29553978 (-)
NZO/HlLtJ	ENSMUSG00225010707	lncRNA gene	Chr2:39125231-39126731 (-)
PWK/PhJ	ENSLUMG00010052681	lncRNA gene	Chr2:29433407-29434914 (-)
SPRET/EiJ	ENSMSPG00010047557	lncRNA gene	Chr2:30138070-30139576 (-)
WSB/EiJ	ENSIUOG00005052980	lncRNA gene	Chr2:29400933-29402433 (-)

Homology

• Gene Tree
  9430097D07Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  11 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000075405 (Evidence)
• NCBI Gene
  319245

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000075405	Ensembl Gene Model | MGI Sequence Detail	1804	C57BL/6J
transcript	ENSMUST00000100190	Ensembl | MGI Sequence Detail	1501	Not Applicable
polypeptide	Q8BS47	UniProt | EBI | MGI Sequence Detail	195	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9430097D07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23529	Chr2:32466272-32466277 (-)	-283 bp