BC005537 Gene Detail

Summary

• Symbol
  BC005537
• Name
  cDNA sequence BC005537
• Synonyms
  8030460C05Rik, MGC:7474

• Feature Type
  protein coding gene
• IDs
  MGI:2441726
  NCBI Gene: 79555
• Alliance
  gene page
• Transcription Start Sites
  14 TSS

Location &
Maps

• Sequence Map
  Chr13:24985640-24996882 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 10.68 cM, cytoband A3.2
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441726	protein coding gene	Chr13:24985640-25000180 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0020380	protein coding gene	Chr13:22285501-22297857 (+)
A/J	MGP_AJ_G0020329	protein coding gene	Chr13:21886503-21898976 (+)
AKR/J	MGP_AKRJ_G0020309	protein coding gene	Chr13:22127494-22139851 (+)
BALB/cJ	MGP_BALBcJ_G0020327	protein coding gene	Chr13:21863534-21875890 (+)
C3H/HeJ	MGP_C3HHeJ_G0020131	protein coding gene	Chr13:22207050-22219406 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020764	protein coding gene	Chr13:23093284-23105640 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018352	protein coding gene	Chr13:20605497-20618663 (+)
CAST/EiJ	MGP_CASTEiJ_G0019648	protein coding gene	Chr13:21914468-21926758 (+)
CBA/J	MGP_CBAJ_G0020085	protein coding gene	Chr13:23979776-23992062 (+)
DBA/2J	MGP_DBA2J_G0020211	protein coding gene	Chr13:21381205-21393984 (+)
FVB/NJ	MGP_FVBNJ_G0020195	protein coding gene	Chr13:21027542-21039898 (+)
LP/J	MGP_LPJ_G0020284	protein coding gene	Chr13:22598017-22610373 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0020222	protein coding gene	Chr13:24229941-24242293 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020806	protein coding gene	Chr13:21973026-21985382 (+)
PWK/PhJ	MGP_PWKPhJ_G0019402	protein coding gene	Chr13:21403904-21416403 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0019218	protein coding gene	Chr13:20799046-20811520 (+)
WSB/EiJ	MGP_WSBEiJ_G0019708	protein coding gene	Chr13:22138057-22150381 (+)

Homology

• Human Ortholog
  C6orf62, chromosome 6 open reading frame 62

• Vertebrate Orthologs
  4

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  C6orf62, chromosome 6 open reading frame 62
  
• Synonyms
  dJ30M3.2, Nbla00237, XTP12
• Links
  HGNC:20998

  NCBI Gene ID: 81688

  neXtProt AC: NX_Q9GZU0

  UniProt: Q9GZU0

  
  
• Chr Location
  6p22.3; chr6:24704861-24720836 (-)  GRCh38

---

• MGI Vertebrate Homology
  BC005537 stringent orthology
  1 human;1 mouse;2 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: C6orf62
• Gene Tree
  BC005537
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  12
• Chemically induced (other)
  1
• Endonuclease-mediated
  2
• Gene trapped
  6
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  2 involving BC005537
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  24 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  752
• Tissues
  32
• cDNA Data
  16
• Literature Summary
  3

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  2
• UniProt
  3
• CCDS
  CCDS26379.1

• Ensembl
  ENSMUSG00000019132 (Evidence)
• NCBI Gene
  79555

Representative Sequences			Length	Strain/Species
genomic	79555	NCBI Gene Model | MGI Sequence Detail	11243	C57BL/6J
transcript	NM_024473	RefSeq | MGI Sequence Detail	2551	C57BL/6
polypeptide	Q99LU8	UniProt | EBI | MGI Sequence Detail	229	Not Applicable

Protein
Information

• UniProt
  3 Sequences
• Protein Ontology
  PR:000060066 uncharacterized protein C6orf62
  (term hierarchy)
• InterPro Domains
  IPR027903 Protein of unknown function DUF4566

Molecular
Reagents

• All nucleic 17

  Genomic 1

  cDNA 16

  
  

  Microarray probesets 5

Other
Accession IDs

MGI:2135251, MGI:2145495

References

• Summaries
  All 43

  Developmental Gene Expression 3

  Phenotypes 16
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for BC005537:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118946	Chr13:24985120-24985141 (+)	-509 bp
Tssr118947	Chr13:24985154-24985167 (+)	-479 bp
Tssr118948	Chr13:24985177-24985196 (+)	-453 bp
Tssr118949	Chr13:24985315-24985322 (+)	-321 bp
Tssr118950	Chr13:24986840-24986850 (+)	1,205 bp
Tssr118951	Chr13:24986852-24986876 (+)	1,224 bp
Tssr118952	Chr13:24986940-24986955 (+)	1,308 bp
Tssr118953	Chr13:24986974-24986991 (+)	1,343 bp
Tssr118954	Chr13:24987001-24987018 (+)	1,370 bp
Tssr118955	Chr13:24987334-24987350 (+)	1,702 bp
Tssr118956	Chr13:24987684-24987696 (+)	2,050 bp
Tssr118957	Chr13:24988892-24988912 (+)	3,262 bp
Tssr118958	Chr13:24990910-24990915 (+)	5,273 bp
Tssr118959	Chr13:24996694-24996705 (+)	11,060 bp