4930403D09Rik Gene Detail

Summary

• Symbol
  4930403D09Rik
• Name
  RIKEN cDNA 4930403D09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441677
  NCBI Gene: 319208
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:34249742-34258386 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 19.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  339 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441677	lncRNA gene	Chr11:34178354-34258392 (+)
129S1/SvImJ	ENSMUSG00200007317	lncRNA gene	Chr11:31288962-31297368 (+)
A/J	ENSMUSG00195007389	lncRNA gene	Chr11:31197417-31205823 (+)
AKR/J	ENSMUSG00220003438	lncRNA gene	Chr11:31394545-31402951 (+)
BALB/cJ	ENSMUSG00180001801	lncRNA gene	Chr11:31230739-31239146 (+)
C3H/HeJ	ENSMUSG00175003836	lncRNA gene	Chr11:31203429-31211837 (+)
C57BL/6NJ	ENSMUSG00215010417	lncRNA gene	Chr11:31160762-31169168 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002584	antisense lncRNA gene	Chr11:29896655-29905018 (+)
CAST/EiJ	ENSTCUG00005030042	lncRNA gene	Chr11:31086380-31094789 (+)
CBA/J	ENSMUSG00210006866	lncRNA gene	Chr11:31095632-31104038 (+)
DBA/2J	ENSMUSG00185010525	lncRNA gene	Chr11:31282569-31290977 (+)
FVB/NJ	ENSMUSG00205012274	lncRNA gene	Chr11:31284870-31293275 (+)
JF1/MsJ	ENSUMUG00000005382	lncRNA gene	Chr11:31542567-31550972 (+)
LP/J	ENSMUSG00230003933	lncRNA gene	Chr11:32448434-32456841 (+)
NOD/ShiLtJ	ENSMUSG00190007483	lncRNA gene	Chr11:31372085-31380490 (+)
NZO/HlLtJ	ENSMUSG00225030784	lncRNA gene	Chr11:34338317-34346726 (+)
PWK/PhJ	ENSLUMG00010017736	lncRNA gene	Chr11:31199506-31207913 (+)
SPRET/EiJ	ENSMSPG00010002280	lncRNA gene	Chr11:31581188-31589564 (+)
WSB/EiJ	ENSIUOG00005002148	lncRNA gene	Chr11:31279387-31287795 (+)

Homology

• Gene Tree
  4930403D09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving 4930403D09Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2

• Ensembl
  ENSMUSG00000087122 (Evidence)
• NCBI Gene
  319208

Representative Sequences			Length	Strain/Species
genomic	319208	NCBI Gene Model | MGI Sequence Detail	8645	C57BL/6J
transcript	NR_167727	RefSeq | MGI Sequence Detail	1094	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930403D09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100922	Chr11:34249695-34249701 (+)	-44 bp
Tssr100923	Chr11:34249706-34249720 (+)	-29 bp
Tssr100924	Chr11:34249736-34249755 (+)	4 bp