Eef1a1-ps1 Pseudogene Detail

Summary

• Symbol
  Eef1a1-ps1
• Name
  eukaryotic translation elongation factor 1 alpha 1, pseudogene 1

• Feature Type
  pseudogene
• IDs
  MGI:2388571
  NCBI Gene: 235503
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:17903987-17905373 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 12.86 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  230 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2388571	pseudogene	Chr19:17903921-17905977 (+)
129S1/SvImJ	ENSMUSG00200021104	pseudogene	Chr19:14598317-14599703 (+)
A/J	ENSMUSG00195017856	pseudogene	Chr19:14741669-14743055 (+)
AKR/J	ENSMUSG00220011018	pseudogene	Chr19:14727583-14728969 (+)
BALB/cJ	ENSMUSG00180018871	pseudogene	Chr19:15118094-15119480 (+)
C3H/HeJ	ENSMUSG00175003980	pseudogene	Chr19:14450024-14451410 (+)
C57BL/6NJ	ENSMUSG00215024081	pseudogene	Chr19:14510319-14511705 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008759	pseudogene	Chr19:14371798-14373176 (+)
CBA/J	ENSMUSG00210012879	pseudogene	Chr19:14674638-14676016 (+)
DBA/2J	ENSMUSG00185014057	pseudogene	Chr19:15084238-15085616 (+)
FVB/NJ	ENSMUSG00205004106	pseudogene	Chr19:14515061-14516447 (+)
JF1/MsJ	ENSUMUG00000039503	pseudogene	Chr19:15313563-15314941 (+)
LP/J	ENSMUSG00230022134	pseudogene	Chr19:15967528-15968914 (+)
NOD/ShiLtJ	ENSMUSG00190020485	pseudogene	Chr19:14466844-14468222 (+)
NZO/HlLtJ	ENSMUSG00225047120	pseudogene	Chr19:19694193-19695571 (+)
PWK/PhJ	ENSLUMG00010008775	pseudogene	Chr19:14635628-14637006 (+)
SPRET/EiJ	ENSMSPG00010018979	pseudogene	Chr19:14636290-14637672 (+)
WSB/EiJ	ENSIUOG00005007283	pseudogene	Chr19:14184551-14185937 (+)

Homology

• Gene Tree
  Eef1a1-ps1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000117822 (Evidence)
• NCBI Gene
  235503

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117822	Ensembl Gene Model | MGI Sequence Detail	1387	C57BL/6J
transcript	ENSMUST00000236146	Ensembl | MGI Sequence Detail	1387	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 2

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:9029 Roth WW, et al., Expression of a gene for mouse eucaryotic elongation factor Tu during murine erythroleukemic cell differentiation. Mol Cell Biol. 1987 Nov;7(11):3929-36
• Latest
  J:249863 Yao K, et al., Unphosphorylated STAT1 represses apoptosis in macrophages during Mycobacteriumtuberculosis infection. J Cell Sci. 2017 May 15;130(10):1740-1751

TSS for Eef1a1-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155441	Chr19:17903916-17903919 (+)	-69 bp