Zfp353-ps Pseudogene Detail

Summary

• Symbol
  Zfp353-ps
• Name
  zinc finger protein 353, pseudogene
• Synonyms
  Zfp353

• Feature Type
  pseudogene
• IDs
  MGI:2387419
  NCBI Gene: 234203
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:42534497-42536146 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 23.89 cM, cytoband B3.1
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2387419	pseudogene	Chr8:42534366-42536349 (-)
129S1/SvImJ	ENSMUSG00200008255	pseudogene	Chr8:37615400-37617049 (-)
A/J	ENSMUSG00195006381	pseudogene	Chr8:38108226-38109875 (-)
AKR/J	ENSMUSG00220006584	pseudogene	Chr8:37916511-37918160 (-)
BALB/cJ	ENSMUSG00180003420	pseudogene	Chr8:37652871-37654520 (-)
C3H/HeJ	ENSMUSG00175015082	pseudogene	Chr8:37800433-37802082 (-)
C57BL/6NJ	ENSMUSG00215010113	pseudogene	Chr8:37601926-37603575 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012315	pseudogene	Chr8:35947140-35948789 (-)
CAST/EiJ	ENSTCUG00005005689	pseudogene	Chr8:37700917-37702566 (-)
CBA/J	ENSMUSG00210012865	pseudogene	Chr8:37670982-37672631 (-)
DBA/2J	ENSMUSG00185006128	pseudogene	Chr8:43541209-43542858 (-)
FVB/NJ	ENSMUSG00205002436	pseudogene	Chr8:36828681-36830331 (-)
JF1/MsJ	ENSUMUG00000016040	pseudogene	Chr8:45268343-45269992 (-)
LP/J	ENSMUSG00230010070	pseudogene	Chr8:47221183-47222832 (-)
NOD/ShiLtJ	ENSMUSG00190016084	pseudogene	Chr8:37695054-37696703 (-)
NZO/HlLtJ	ENSMUSG00225012178	pseudogene	Chr8:50856712-50858361 (-)
PWK/PhJ	ENSLUMG00010013523	pseudogene	Chr8:37489157-37490806 (-)
SPRET/EiJ	ENSMSPG00010004676	pseudogene	Chr8:38353730-38355366 (-)
WSB/EiJ	ENSIUOG00005005994	pseudogene	Chr8:38550851-38552500 (-)

Homology

• Gene Tree
  Zfp353-ps
  

Expression

• Assay Results
  633
• Tissues
  2
• cDNA Data
  2
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• CCDS
  CCDS22264.1

• Ensembl
  ENSMUSG00000095057 (Evidence)
• NCBI Gene
  234203

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095057	Ensembl Gene Model | MGI Sequence Detail	1650	C57BL/6J
transcript	ENSMUST00000107130	Ensembl | MGI Sequence Detail	1650	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 2

  Primer pair 1

  
  

  Microarray probesets 2

References

• Summaries
  All 12

  Developmental Gene Expression 1
• Earliest
  J:78671 Chen HH, et al., Generation of two homologous and intronless zinc-finger protein genes, zfp352 and zfp353, with different expression patterns by retrotransposition. Genomics. 2002 Jan;79(1):18-23
• Latest
  J:174767 Tang F, et al., Deterministic and stochastic allele specific gene expression in single mouse blastomeres. PLoS One. 2011;6(6):e21208

TSS for Zfp353-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81117	Chr8:42536339-42536353 (-)	-200 bp