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BC006965 Gene Detail
Summary
  • Symbol
    BC006965
  • Name
    cDNA sequence BC006965
  • Synonyms
    MGC:6956, MGC:6983
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2384955
    NCBI Gene: 217294
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:112554753-112602182 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 76.16 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    603 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384955
 lncRNA gene Chr11:112554753-112672802 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015218
 unclassified non-coding RNA gene Chr11:116413600-116538086 (-)
A/J MGP_AJ_G0015192
 unclassified non-coding RNA gene Chr11:111411329-111532604 (-)
AKR/J MGP_AKRJ_G0015155
 unclassified non-coding RNA gene Chr11:114667376-114803552 (-)
BALB/cJ MGP_BALBcJ_G0015154
 unclassified non-coding RNA gene Chr11:111805208-111926433 (-)
C3H/HeJ MGP_C3HHeJ_G0014978
 unclassified non-coding RNA gene Chr11:115033159-115158111 (-)
C57BL/6NJ MGP_C57BL6NJ_G0015611
 unclassified non-coding RNA gene Chr11:119912416-120047801 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013353
 unclassified non-coding RNA gene Chr11:108510195-108628318 (-)
CAST/EiJ MGP_CASTEiJ_G0014531
 unclassified non-coding RNA gene Chr11:116267303-116385852 (-)
CBA/J MGP_CBAJ_G0014957
 unclassified non-coding RNA gene Chr11:124818017-124950636 (-)
DBA/2J MGP_DBA2J_G0015050
 unclassified non-coding RNA gene Chr11:110854384-110975058 (-)
FVB/NJ MGP_FVBNJ_G0015061
 unclassified non-coding RNA gene Chr11:110301215-110419654 (-)
LP/J MGP_LPJ_G0015131
 unclassified non-coding RNA gene Chr11:116840313-116971964 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015088
 unclassified non-coding RNA gene Chr11:123998032-124128993 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0015650
 unclassified non-coding RNA gene Chr11:115314013-115444754 (-)
PWK/PhJ MGP_PWKPhJ_G0014323
 unclassified non-coding RNA gene Chr11:112032271-112156021 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014110
 unclassified non-coding RNA gene Chr11:115106297-115233233 (-)
WSB/EiJ MGP_WSBEiJ_G0014634
 unclassified non-coding RNA gene Chr11:115253899-115381746 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    815
  • Tissues
    41
  • cDNA Data
    9
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    52
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 217294 NCBI Gene Model | MGI Sequence Detail 47430 C57BL/6J ±  kb
transcript NR_024085 RefSeq | MGI Sequence Detail 1952 C57BL/6  
polypeptide Q3TZB1 UniProt | EBI | MGI Sequence Detail 80 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 6
References
more
  • Summaries
    All 17
    Developmental Gene Expression 2
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
05/07/2024
MGI 6.23 		The Jackson Laboratory