BC002059 Gene Detail

Summary

• Symbol
  BC002059
• Name
  cDNA sequence BC002059
• Synonyms
  MGC:6110

• Feature Type
  lncRNA gene
• IDs
  MGI:2384864
  NCBI Gene: 213811
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:17171798-17194419 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 9.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  486 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2384864	lncRNA gene	Chr17:17171776-17213198 (+)
129S1/SvImJ	ENSMUSG00200038587	lncRNA gene	Chr17:12800621-12823246 (+)
A/J	ENSMUSG00195038292	lncRNA gene	Chr17:13554133-13576762 (+)
AKR/J	ENSMUSG00220026679	lncRNA gene	Chr17:13246360-13268976 (+)
BALB/cJ	ENSMUSG00180017479	lncRNA gene	Chr17:12793162-12815787 (+)
C3H/HeJ	ENSMUSG00175040979	lncRNA gene	Chr17:12672072-12694687 (+)
C57BL/6NJ	ENSMUSG00215043762	lncRNA gene	Chr17:13000283-13004007 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023841	lncRNA gene	Chr17:13178922-13201612 (+)
CBA/J	ENSMUSG00210041320	lncRNA gene	Chr17:12516066-12538682 (+)
DBA/2J	ENSMUSG00185040852	lncRNA gene	Chr17:14521264-14543889 (+)
FVB/NJ	ENSMUSG00205032913	lncRNA gene	Chr17:13175978-13198549 (+)
JF1/MsJ	ENSUMUG00000038127	lncRNA gene	Chr17:14071243-14093896 (+)
LP/J	ENSMUSG00230027782	lncRNA gene	Chr17:15919468-15942094 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225048349	lncRNA gene	Chr17:17873106-17895739 (+)
PWK/PhJ	ENSLUMG00010020523	lncRNA gene	Chr17:12799387-12822029 (+)
SPRET/EiJ	ENSMSPG00010041432	lncRNA gene	Chr17:14111334-14134252 (+)
WSB/EiJ	ENSIUOG00005041076	lncRNA gene	Chr17:13583650-13606278 (+)

Homology

• Gene Tree
  BC002059
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  674
• Tissues
  16
• cDNA Data
  7
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000060149 (Evidence)
• NCBI Gene
  213811

Representative Sequences			Length	Strain/Species
genomic	213811	NCBI Gene Model | MGI Sequence Detail	22622	C57BL/6J
transcript	NR_166920	RefSeq | MGI Sequence Detail	2094	C57BL/6
polypeptide	Q99M29	UniProt | EBI | MGI Sequence Detail	292	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR039938 Transcription factor Sp4-like
  IPR036236 Zinc finger C2H2 superfamily
  IPR013087 Zinc finger C2H2-type

Molecular
Reagents

• All nucleic 8

  cDNA 7

  Primer pair 1

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Developmental Gene Expression 2

  Phenotypes 4
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:331896 Huang J, et al., m(6)A-modified lincRNA Dubr is required for neuronal development by stabilizing YTHDF1/3 and facilitating mRNA translation. Cell Rep. 2022 Nov 22;41(8):111693

TSS for BC002059:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142775	Chr17:17171784-17171815 (+)	2 bp
Tssr142776	Chr17:17171818-17171851 (+)	37 bp