BC016579 MGI Mouse Gene Detail - MGI:2384848

Symbol

BC016579
Name

cDNA sequence, BC016579
Synonyms

MGC:27720

Feature Type

protein coding gene
IDs

MGI:2384848
NCBI Gene: 212998
Alliance

genome feature page
Transcription Start Sites

2 TSS

Sequence Map

Chr16:45447211-45474431 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 16, 29.76 cM
Mapping Data

1 experiment

SNPs within 2kb

853 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2384848	protein coding gene	Chr16:45447211-45476215 (-)
129S1/SvImJ	ENSMUSG00200021273	protein coding gene	Chr16:42329591-42356661 (-)
A/J	ENSMUSG00195003371	protein coding gene	Chr16:41932210-41959270 (-)
AKR/J	ENSMUSG00220022368	protein coding gene	Chr16:42284256-42311330 (-)
BALB/cJ	ENSMUSG00180028193	protein coding gene	Chr16:42137151-42164206 (-)
C3H/HeJ	ENSMUSG00175025373	protein coding gene	Chr16:42411700-42438942 (-)
C57BL/6NJ	ENSMUSG00215005557	protein coding gene	Chr16:42231616-42258835 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020782	protein coding gene	Chr16:42781426-42808920 (-)
CAST/EiJ	ENSTCUG00005012614	protein coding gene	Chr16:42615492-42642731 (-)
CBA/J	ENSMUSG00210016457	protein coding gene	Chr16:42433862-42461087 (-)
DBA/2J	ENSMUSG00185010280	protein coding gene	Chr16:42316803-42343858 (-)
FVB/NJ	ENSMUSG00205011155	protein coding gene	Chr16:42181311-42209128 (-)
JF1/MsJ	ENSUMUG00000014932	protein coding gene	Chr16:42547324-42574553 (-)
LP/J	ENSMUSG00230028396	protein coding gene	Chr16:44883501-44910567 (-)
NOD/ShiLtJ	ENSMUSG00190018514	protein coding gene	Chr16:42327656-42354731 (-)
NZO/HlLtJ	ENSMUSG00225028673	protein coding gene	Chr16:47975196-48002266 (-)
PWK/PhJ	ENSLUMG00010027802	protein coding gene	Chr16:42411575-42438765 (-)
SPRET/EiJ	ENSMSPG00010006982	protein coding gene	Chr16:42585667-42614560 (-)
WSB/EiJ	ENSIUOG00005013030	protein coding gene	Chr16:42505494-42532610 (-)

Human Ortholog

C3orf52, chromosome 3 open reading frame 52

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C3orf52, chromosome 3 open reading frame 52
Synonyms

HYPT15, TTMP
Links

HGNC:26255

NCBI Gene ID: 79669

UniProt: Q5BVD1
Chr Location

3q13.2; chr3:112086335-112136381 (+) GRCh38

MGI Vertebrate Homology

BC016579 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: C3orf52
Gene Tree

BC016579

Diseases

1 with human C3orf52 associations

				Human Disease	Mouse Models
				hypotrichosis 15 IDs hypotrichosis 15 DOID:0060968 OMIM:620177

Click on a disease name to see all genes associated with that disease.

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

1
Endonuclease-mediated

1
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

11 strains or lines available

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All GO Annotations

2
GO References

2

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

7

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

38
RefSeq

10
UniProt

2
CCDS

CCDS49862.1

Ensembl

ENSMUSG00000033187 (Evidence)
NCBI Gene

212998

			Length	Strain/Species	Flank
genomic	ENSMUSG00000033187	Ensembl Gene Model \| MGI Sequence Detail	27221	C57BL/6J	± kb
transcript	ENSMUST00000036732	Ensembl \| MGI Sequence Detail	2142	Not Applicable
polypeptide	ENSMUSP00000037651	Ensembl \| MGI Sequence Detail	218	Not Applicable

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UniProt

2 Sequences
Protein Ontology

PR:000059812 TPA-induced transmembrane protein

(term hierarchy)
InterPro Domains

IPR033223 TPA-induced transmembrane protein

IPR062108 TPA-induced transmembrane protein, N-terminal helix

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All nucleic 7

cDNA 7

Microarray probesets 2

Summaries

All 20

Gene Ontology 2

Phenotypes 2
Earliest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for BC016579:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141242	Chr16:45474446-45474459 (-)	-22 bp
Tssr141241	Chr16:45474413-45474424 (-)	12 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/08/2026 MGI 6.24