Erdr1x Gene Detail

Summary

• Symbol
  Erdr1x
• Name
  erythroid differentiation regulator 1 x
• Synonyms
  edr, Erdr1, Gm21887, MGC:5764

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:2384747
  NCBI Gene: 170942
• Alliance
  genome feature page
• Transcription Start Sites
  15 TSS
• Homologous PAR Feature
  Erdr1y

Location &
Maps

• Sequence Map
  ChrX:168792690-168801793 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome XY, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2384747	protein coding gene	ChrX:168792690-168801793 (+)
129S1/SvImJ	ENSMUSG00200014083	lncRNA gene	ChrX:145554228-145563505 (+)
129S1/SvImJ	ENSMUSG00200014189	lncRNA gene	ChrX:145645742-145650937 (+)
A/J	ENSMUSG00195016454	lncRNA gene	ChrX:150655434-150664453 (+)
AKR/J	ENSMUSG00220011013	lncRNA gene	ChrX:142557169-142562731 (+)
BALB/cJ	ENSMUSG00180018382	lncRNA gene	ChrX:146040289-146047682 (+)
C3H/HeJ	ENSMUSG00175010581	lncRNA gene	ChrX:150598215-150604971 (+)
C57BL/6NJ	ENSMUSG00215000983	lncRNA gene	Chr13:115337112-115340054 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210030012	lncRNA gene	ChrX:148077623-148082996 (+)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205002871	lncRNA gene	ChrX:146486561-146487632 (+)
JF1/MsJ	ENSUMUG00000010857	lncRNA gene	ChrX:183295516-183301755 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190022086	lncRNA gene	ChrX:147020919-147028769 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010001659	lncRNA gene	ChrX:144363004-144370653 (+)
SPRET/EiJ	ENSMSPG00010007038	lncRNA gene	Chr13:115856606-115860289 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Erdr1x
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  694
• Tissues
  37
• cDNA Data
  33
• Literature Summary
  3

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  2

• Ensembl
  ENSMUSG00000095562 (Evidence)
• NCBI Gene
  170942 (also overlaps Erdr1y)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095562	Ensembl Gene Model | MGI Sequence Detail	9104	C57BL/6J
transcript	ENSMUST00000238482	Ensembl | MGI Sequence Detail	1163	Not Applicable
polypeptide	Q8VEL1	UniProt | EBI | MGI Sequence Detail	177	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 36

  cDNA 34

  Primer pair 1

  Other 1

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:5434051, MGI:6847656, MGI:7425330

References

• Summaries
  All 27

  Developmental Gene Expression 3

  Phenotypes 6
• Earliest
  J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
• Latest
  J:182194 Jung MK, et al., Erythroid differentiation regulator 1, an interleukin 18-regulated gene, acts as a metastasis suppressor in melanoma. J Invest Dermatol. 2011 Oct;131(10):2096-104

TSS for Erdr1x:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162766	ChrX:168791337-168791359 (+)	-1,342 bp
Tssr5722	ChrX:168792261-168792272 (+)	-423 bp
Tssr5723	ChrX:168792285-168792287 (+)	-404 bp
Tssr5724	ChrX:168792604-168792618 (+)	-79 bp
Tssr5725	ChrX:168792641-168792667 (+)	-36 bp
Tssr5726	ChrX:168792678-168792706 (+)	2 bp
Tssr5727	ChrX:168792718-168792733 (+)	36 bp
Tssr5728	ChrX:168792794-168792814 (+)	114 bp
Tssr5729	ChrX:168793117-168793172 (+)	455 bp
Tssr5730	ChrX:168793339-168793347 (+)	653 bp
Tssr5731	ChrX:168794426-168794438 (+)	1,742 bp
Tssr5732	ChrX:168800147-168800183 (+)	7,475 bp
Tssr5733	ChrX:168800425-168800432 (+)	7,739 bp
Tssr5734	ChrX:168801110-168801119 (+)	8,425 bp
Tssr5735	ChrX:168801248-168801255 (+)	8,562 bp