Msantd2 MGI Mouse Gene Detail - MGI:2384579 - Myb/SANT-like DNA-binding domain containing 2

Symbol

Msantd2
Name

Myb/SANT-like DNA-binding domain containing 2
Synonyms

2810450G17Rik, 9530092B10Rik, BC024479, MGC:37388

Feature Type

protein coding gene
IDs

MGI:2384579
NCBI Gene: 235184
Alliance

genome feature page
Transcription Start Sites

5 TSS

Sequence Map

Chr9:37400317-37435921 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 9, 20.77 cM
Mapping Data

2 experiments

SNPs within 2kb

799 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2384579	protein coding gene	Chr9:37397034-37437409 (+)
129S1/SvImJ	ENSMUSG00200037962	protein coding gene	Chr9:34387460-34423080 (+)
A/J	ENSMUSG00195046743	protein coding gene	Chr9:34174096-34209705 (+)
AKR/J	ENSMUSG00220040951	protein coding gene	Chr9:34250435-34285903 (+)
BALB/cJ	ENSMUSG00180044493	protein coding gene	Chr9:34302434-34338066 (+)
C3H/HeJ	ENSMUSG00175046287	protein coding gene	Chr9:34303437-34339058 (+)
C57BL/6NJ	ENSMUSG00215032584	protein coding gene	Chr9:34306191-34341792 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0031983	protein coding gene	Chr9:33637604-33672085 (+)
CAST/EiJ	ENSTCUG00005042749	protein coding gene	Chr9:34253343-34288956 (+)
CBA/J	ENSMUSG00210043879	protein coding gene	Chr9:34285503-34321070 (+)
DBA/2J	ENSMUSG00185031579	protein coding gene	Chr9:34399849-34435317 (+)
FVB/NJ	ENSMUSG00205021588	protein coding gene	Chr9:34665372-34700911 (+)
JF1/MsJ	ENSUMUG00000035504	protein coding gene	Chr9:34490470-34526119 (+)
LP/J	ENSMUSG00230028499	protein coding gene	Chr9:34748119-34783765 (+)
NOD/ShiLtJ	ENSMUSG00190028739	protein coding gene	Chr9:34418081-34453712 (+)
NZO/HlLtJ	ENSMUSG00225018199	protein coding gene	Chr9:34716556-34752206 (+)
PWK/PhJ	ENSLUMG00010044871	protein coding gene	Chr9:34431757-34467677 (+)
SPRET/EiJ	ENSMSPG00010030324	protein coding gene	Chr9:34990458-35025924 (+)
WSB/EiJ	ENSIUOG00005036539	protein coding gene	Chr9:33925125-33960704 (+)

Human Ortholog

MSANTD2, Myb/SANT DNA binding domain containing 2

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

MSANTD2, Myb/SANT DNA binding domain containing 2
Synonyms

C11orf61
Links

HGNC:26266

NCBI Gene ID: 79684

UniProt: Q6P1R3
Chr Location

11q24.2; chr11:124766498-124800706 (-) GRCh38

MGI Vertebrate Homology

Msantd2 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: MSANTD2
Gene Tree

Msantd2

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Phenotype Summary

4 phenotypes from 1 allele in 1 genetic background
11 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

14
Endonuclease-mediated

4
Gene trapped

9
Targeted

1
Incidental Mutations

APF , CvDC
Find Mice (IMSR)

33 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

2
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

6
Literature Summary

1

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase msantd2

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All Sequences

71
RefSeq

21
UniProt

5
CCDS

CCDS22978.1

Ensembl

ENSMUSG00000042138 (Evidence)
NCBI Gene

235184

			Length	Strain/Species	Flank
genomic	ENSMUSG00000042138	Ensembl Gene Model \| MGI Sequence Detail	35605	C57BL/6J	± kb
transcript	ENSMUST00000239459	Ensembl \| MGI Sequence Detail	2591	Not Applicable
polypeptide	ENSMUSP00000159310	Ensembl \| MGI Sequence Detail	647	Not Applicable

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UniProt

5 Sequences
Protein Ontology

PR:000031578 Myb/SANT-like DNA-binding domain-containing protein 2

(term hierarchy)
InterPro Domains

IPR044822 Myb/SANT-like DNA-binding domain 4

IPR042792 Myb/SANT-like DNA-binding domain-containing protein 2

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All nucleic 6

cDNA 6

Microarray probesets 2

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MGI:1920016, MGI:1926120

Summaries

All 32

Developmental Gene Expression 1

Gene Ontology 1

Phenotypes 11
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Msantd2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84392	Chr9:37400066-37400078 (+)	-245 bp
Tssr84393	Chr9:37400284-37400295 (+)	-27 bp
Tssr84394	Chr9:37400319-37400346 (+)	16 bp
Tssr2827	Chr9:37400358-37400375 (+)	50 bp
Tssr84395	Chr9:37400577-37400622 (+)	283 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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