Serpina3l-ps Pseudogene Detail

Summary

• Symbol
  Serpina3l-ps
• Name
  serine (or cysteine) peptidase inhibitor, clade A, member 3L, pseudogene
• Synonyms
  3E2, alpha-1 antiproteinase, Serpina3l

• Feature Type
  pseudogene
• IDs
  MGI:2182857
  NCBI Gene: 628916
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:104324262-104329793 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 54.04 cM, cytoband F1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  209 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2182857	pseudogene	Chr12:104324249-104330001 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040015	pseudogene	Chr12:106149073-106154600 (+)
A/J	MGP_AJ_G0040019	pseudogene	Chr12:102118878-102124409 (+)
AKR/J	MGP_AKRJ_G0039938	pseudogene	Chr12:105061529-105067056 (+)
BALB/cJ	MGP_BALBcJ_G0039999	pseudogene	Chr12:102529257-102534784 (+)
C3H/HeJ	MGP_C3HHeJ_G0039649	pseudogene	Chr12:105525857-105531388 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040579	pseudogene	Chr12:109459779-109465310 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038753	pseudogene	Chr12:100334575-100340104 (+)
CBA/J	MGP_CBAJ_G0039615	pseudogene	Chr12:113647066-113652593 (+)
DBA/2J	MGP_DBA2J_G0039806	pseudogene	Chr12:101654871-101660398 (+)
FVB/NJ	MGP_FVBNJ_G0039776	pseudogene	Chr12:100440248-100445775 (+)
LP/J	MGP_LPJ_G0039852	pseudogene	Chr12:106006509-106012036 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039762	pseudogene	Chr12:117120344-117125871 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040674	pseudogene	Chr12:104491484-104497015 (+)
PWK/PhJ	MGP_PWKPhJ_G0038437	pseudogene	Chr12:96165432-96170981 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0038979	pseudogene	Chr12:105448884-105454411 (+)

Homology

• Gene Tree
  Serpina3l-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Serpina3l-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000091157 (Evidence)
• NCBI Gene
  628916

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091157	Ensembl Gene Model | MGI Sequence Detail	5532	C57BL/6J
transcript	ENSMUST00000163975	Ensembl | MGI Sequence Detail	1264	Not Applicable

Other
Accession IDs

MGI:3648113

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:25107 Inglis JD, et al., The murine Spi-2 proteinase inhibitor locus: a multigene family with a hypervariable reactive site domain. EMBO J. 1991 Feb;10(2):255-61
• Latest
  J:82699 Forsyth S, et al., A review and comparison of the murine alpha(1)-antitrypsin and alpha(1)-antichymotrypsin multigene clusters with the human clade A serpins. Genomics. 2003 Mar;81(3):336-45