Serpina3l-ps Pseudogene Detail

Summary

• Symbol
  Serpina3l-ps
• Name
  serine (or cysteine) peptidase inhibitor, clade A, member 3L, pseudogene
• Synonyms
  3E2, alpha-1 antiproteinase, Serpina3l

• Feature Type
  pseudogene
• IDs
  MGI:2182857
  NCBI Gene: 628916
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:104324262-104329793 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 54.04 cM, cytoband F1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  418 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2182857	pseudogene	Chr12:104324249-104330001 (+)
129S1/SvImJ	ENSMUSG00200027603	pseudogene	Chr12:96087802-96093329 (+)
A/J	ENSMUSG00195021027	pseudogene	Chr12:98651867-98657398 (+)
AKR/J	ENSMUSG00220044433	pseudogene	Chr12:96485794-96491321 (+)
BALB/cJ	ENSMUSG00180036960	pseudogene	Chr12:97819473-97825000 (+)
C3H/HeJ	ENSMUSG00175033729	pseudogene	Chr12:100464048-100469579 (+)
C57BL/6NJ	ENSMUSG00215041838	pseudogene	Chr12:97125951-97131482 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021521	pseudogene	Chr12:96567567-96573096 (+)
CBA/J	ENSMUSG00210015140	pseudogene	Chr12:97511417-97516944 (+)
DBA/2J	ENSMUSG00185047230	pseudogene	Chr12:99277497-99283024 (+)
FVB/NJ	ENSMUSG00205020066	pseudogene	Chr12:96511167-96516694 (+)
JF1/MsJ	ENSUMUG00000036255	pseudogene	Chr12:104019275-104024806 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190033301	pseudogene	Chr12:88695960-88701487 (-)
NZO/HlLtJ	ENSMUSG00225038665	pseudogene	Chr12:108090589-108096120 (+)
PWK/PhJ	ENSLUMG00010013432	pseudogene	Chr12:97461693-97467242 (+)
SPRET/EiJ	ENSMSPG00010021020	pseudogene	Chr12:99848880-99852982 (+)
WSB/EiJ	ENSIUOG00005009949	pseudogene	Chr12:96522302-96527829 (+)

Homology

• Gene Tree
  Serpina3l-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Serpina3l-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000091157 (Evidence)
• NCBI Gene
  628916

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091157	Ensembl Gene Model | MGI Sequence Detail	5532	C57BL/6J
transcript	ENSMUST00000163975	Ensembl | MGI Sequence Detail	1264	Not Applicable

Other
Accession IDs

MGI:3648113

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:25107 Inglis JD, et al., The murine Spi-2 proteinase inhibitor locus: a multigene family with a hypervariable reactive site domain. EMBO J. 1991 Feb;10(2):255-61
• Latest
  J:82699 Forsyth S, et al., A review and comparison of the murine alpha(1)-antitrypsin and alpha(1)-antichymotrypsin multigene clusters with the human clade A serpins. Genomics. 2003 Mar;81(3):336-45