About   Help   FAQ
Pnma3 Gene Detail
Summary
  • Symbol
    Pnma3
  • Name
    paraneoplastic antigen MA3
  • Feature Type
    protein coding gene
  • IDs
    MGI:2180565
    NCBI Gene: 245468
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:72108393-72111797 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 37.29 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    17 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2180565
 protein coding gene ChrX:72108393-72111797 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035799
 protein coding gene ChrX:68763535-68766965 (+)
A/J MGP_AJ_G0035783
 protein coding gene ChrX:68958777-68962214 (+)
AKR/J MGP_AKRJ_G0035705
 protein coding gene ChrX:70800669-70804069 (+)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0035473
 protein coding gene ChrX:69262931-69266436 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036300
 protein coding gene ChrX:70856774-70861322 (+)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J MGP_DBA2J_G0035601
 protein coding gene ChrX:68450026-68453158 (+)
FVB/NJ no annotation
LP/J MGP_LPJ_G0035690
 protein coding gene ChrX:69616923-69619968 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035587
 protein coding gene ChrX:75397479-75400900 (+)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0034465
 protein coding gene ChrX:52575255-52580585 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034300
 protein coding gene ChrX:55524166-55529830 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    PNMA3, PNMA family member 3
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PNMA3, PNMA family member 3
  • Synonyms
    MA3, MA5
  • Links
    NCBI Gene ID: 29944
    neXtProt AC: NX_Q9UL41
    UniProt: Q9UL41

  • Chr Location
    Xq28; chrX:153056409-153060467 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    3 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    710
  • Tissues
    1
  • cDNA Data
    5
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 245468 NCBI Gene Model | MGI Sequence Detail 3405 C57BL/6J ±  kb
    transcript NM_153169 RefSeq | MGI Sequence Detail 3442 Not Specified  
    polypeptide Q8JZW8 UniProt | EBI | MGI Sequence Detail 466 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 6
      cDNA 5
      Primer pair 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 26
      Developmental Gene Expression 2
      Gene Ontology 2
      Phenotypes 3
    • Earliest
      J:99307 Raefski AS, et al., Identification of a cluster of X-linked imprinted genes in mice. Nat Genet. 2005 Jun;37(6):620-4
    • Latest
      J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory