Vmn1r67 Gene Detail

Summary

• Symbol
  Vmn1r67
• Name
  vomeronasal 1 receptor 67
• Synonyms
  V1re10

• Feature Type
  protein coding gene
• IDs
  MGI:2159632
  NCBI Gene: 171263
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:10180716-10181714 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 6.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2159632	protein coding gene	Chr7:10177258-10183129 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0031622	protein coding gene	Chr7:7707240-7708235 (+)
A/J	MGP_AJ_G0031598	protein coding gene	Chr7:7535235-7536230 (+)
AKR/J	MGP_AKRJ_G0031524	protein coding gene	Chr7:7810161-7811156 (+)
BALB/cJ	MGP_BALBcJ_G0031605	protein coding gene	Chr7:7672460-7673455 (+)
C3H/HeJ	MGP_C3HHeJ_G0031326	protein coding gene	Chr7:7702930-7703925 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0032069	protein coding gene	Chr7:8135714-8136709 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0030686	protein coding gene	Chr7:5706662-5707657 (+)
CBA/J	MGP_CBAJ_G0031283	protein coding gene	Chr7:8236359-8237354 (+)
DBA/2J	MGP_DBA2J_G0031441	protein coding gene	Chr7:7464272-7465267 (+)
FVB/NJ	MGP_FVBNJ_G0031395	protein coding gene	Chr7:7472588-7473583 (+)
LP/J	MGP_LPJ_G0031527	protein coding gene	Chr7:7761331-7762326 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0031434	protein coding gene	Chr7:8248901-8249896 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0032097	protein coding gene	Chr7:7536476-7537471 (+)
PWK/PhJ	MGP_PWKPhJ_G0030413	protein coding gene	Chr7:6073007-6074002 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0030241	protein coding gene	Chr7:4393266-4394261 (+)
WSB/EiJ	MGP_WSBEiJ_G0030781	protein coding gene	Chr7:7667110-7668105 (+)

Homology

• Human Ortholog
  VN1R2, vomeronasal 1 receptor 2

• Vertebrate Orthologs
  5

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  VN1R2, vomeronasal 1 receptor 2
  
• Synonyms
  V1RL2
• Links
  HGNC:19872

  NCBI Gene ID: 317701

  neXtProt AC: NX_Q8NFZ6

  UniProt: Q8NFZ6

  
  
• Chr Location
  19q13.42; chr19:53258292-53261837 (+)  GRCh38

---

• MGI Vertebrate Homology
  Vmn1r67 stringent orthology
  1 human;1 mouse;3 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: VN1R2
• Gene Tree
  Vmn1r67
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  19 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2
• UniProt
  3
• CCDS
  CCDS39766.1

• Ensembl
  ENSMUSG00000046716 (Evidence)
• NCBI Gene
  171263

Representative Sequences			Length	Strain/Species
genomic	171263	NCBI Gene Model | MGI Sequence Detail	999	C57BL/6J
transcript	NM_134229	RefSeq | MGI Sequence Detail	999	Not Specified
polypeptide	NP_598990	RefSeq | MGI Sequence Detail	305	Not Specified

Protein
Information

• UniProt
  3 Sequences
• InterPro Domains
  IPR017452 GPCR, rhodopsin-like, 7TM
  IPR004072 Vomeronasal receptor, type 1

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11
• Earliest
  J:74518 Rodriguez I, et al., Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Nat Neurosci. 2002 Feb;5(2):134-40
• Latest
  J:165130 Karn RC, et al., A candidate subspecies discrimination system involving a vomeronasal receptor gene with different alleles fixed in M. m. domesticus and M. m. musculus. PLoS One. 2010;5(9)