AA543401 Pseudogene Detail

Summary

• Symbol
  AA543401
• Name
  cDNA sequence, AA543401
• Synonyms
  Mycs-like

• Feature Type
  pseudogene
• IDs
  MGI:2155152
  NCBI Gene: 100417434
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:107070006-107071260 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 57.98 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2155152	pseudogene	Chr9:107069992-107071260 (+)
129S1/SvImJ	ENSMUSG00200044132	pseudogene	Chr9:104267700-104268968 (+)
A/J	ENSMUSG00195046035	pseudogene	Chr9:103486432-103487700 (+)
AKR/J	ENSMUSG00220031506	pseudogene	Chr9:103876321-103877589 (+)
BALB/cJ	ENSMUSG00180036590	pseudogene	Chr9:103802883-103804151 (+)
C3H/HeJ	ENSMUSG00175045206	pseudogene	Chr9:104145230-104146498 (+)
C57BL/6NJ	ENSMUSG00215040975	pseudogene	Chr9:104119602-104120870 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012479	pseudogene	Chr9:102536529-102537864 (+)
CAST/EiJ	ENSTCUG00005036219	pseudogene	Chr9:103900254-103901522 (+)
CBA/J	ENSMUSG00210044026	pseudogene	Chr9:103989798-103991066 (+)
DBA/2J	ENSMUSG00185045386	pseudogene	Chr9:104154575-104155843 (+)
FVB/NJ	ENSMUSG00205049457	pseudogene	Chr9:104155896-104157164 (+)
JF1/MsJ	ENSUMUG00000055947	pseudogene	Chr9:103977972-103979240 (+)
LP/J	ENSMUSG00230050626	pseudogene	Chr9:104296641-104297909 (+)
NOD/ShiLtJ	ENSMUSG00190049390	pseudogene	Chr9:103788469-103789737 (+)
NZO/HlLtJ	ENSMUSG00225024793	pseudogene	Chr9:104530752-104532020 (+)
PWK/PhJ	ENSLUMG00010043147	pseudogene	Chr9:103935725-103936993 (+)
SPRET/EiJ	ENSMSPG00010047085	pseudogene	Chr9:105774629-105775901 (+)
WSB/EiJ	ENSIUOG00005047163	pseudogene	Chr9:103239672-103240940 (+)

Homology

• Gene Tree
  AA543401
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000092125 (Evidence)
• NCBI Gene
  100417434

Representative Sequences			Length	Strain/Species
genomic	100417434	NCBI Gene Model | MGI Sequence Detail	1255	C57BL/6J
transcript	NR_102273	RefSeq | MGI Sequence Detail	1255	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 4

  Primer pair 2

References

• Summaries
  All 8
• Earliest
  J:71144 Yamasaki Y, et al., Mouse chromosome 19 and distal rat chromosome 1: a chromosome segment conserved in evolution. Hereditas. 2001;134(1):23-34