Krtap13-20 Gene Detail

Summary

• Symbol
  Krtap13-20
• Name
  keratin associated protein 13-20
• Synonyms
  2310034C09Rik

• Feature Type
  protein coding gene
• IDs
  MGI:2152338
  NCBI Gene: 117172
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:88555735-88556677 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 51.40 cM, cytoband C3.3
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2152338	protein coding gene	Chr16:88555735-88556680 (+)
129S1/SvImJ	ENSMUSG00200036872	protein coding gene	Chr16:85431589-85432534 (+)
A/J	ENSMUSG00195026011	protein coding gene	Chr16:85234824-85235769 (+)
AKR/J	ENSMUSG00220015371	protein coding gene	Chr16:85426556-85427500 (+)
BALB/cJ	ENSMUSG00180013989	protein coding gene	Chr16:85308091-85309036 (+)
C3H/HeJ	ENSMUSG00175014840	protein coding gene	Chr16:85646314-85647259 (+)
C57BL/6NJ	ENSMUSG00215023914	protein coding gene	Chr16:85436721-85437666 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020913	protein coding gene	Chr16:83251720-83252605 (+)
CAST/EiJ	ENSTCUG00005017780	protein coding gene	Chr16:85005576-85006521 (+)
CBA/J	ENSMUSG00210032091	protein coding gene	Chr16:85536786-85537730 (+)
DBA/2J	ENSMUSG00185030550	protein coding gene	Chr16:85488084-85489028 (+)
FVB/NJ	ENSMUSG00205012326	protein coding gene	Chr16:85284940-85285885 (+)
JF1/MsJ	ENSUMUG00000028190	protein coding gene	Chr16:85642625-85643569 (+)
LP/J	ENSMUSG00230030403	protein coding gene	Chr16:87991302-87992247 (+)
NOD/ShiLtJ	ENSMUSG00190025070	protein coding gene	Chr16:85462552-85463497 (+)
NZO/HlLtJ	ENSMUSG00225029489	protein coding gene	Chr16:91176234-91177179 (+)
PWK/PhJ	ENSLUMG00010013654	protein coding gene	Chr16:85286821-85287765 (+)
SPRET/EiJ	ENSMSPG00010028313	protein coding gene	Chr16:86431094-86432038 (+)
WSB/EiJ	ENSIUOG00005018773	protein coding gene	Chr16:85425143-85426087 (+)

Homology

• Human Ortholog
  KRTAP13-1, keratin associated protein 13-1

• Vertebrate Orthologs
  4

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  KRTAP13-1, keratin associated protein 13-1
  
• Synonyms
  KAP13.1, KRTAP13.1
• Links
  HGNC:18924

  NCBI Gene ID: 140258

  UniProt: Q8IUC0

  
  
• Chr Location
  21q22.11; chr21:30396031-30396822 (+)  GRCh38

---

• Human Ortholog
  KRTAP13-2, keratin associated protein 13-2
  
• Synonyms
  KAP13-2
• Links
  HGNC:18923

  NCBI Gene ID: 337959

  UniProt: Q52LG2

  
  
• Chr Location
  21q22.11; chr21:30371390-30372271 (-)  GRCh38

---

• Human Ortholog
  KRTAP13-4, keratin associated protein 13-4
  
• Synonyms
  KAP13.4
• Links
  HGNC:18926

  NCBI Gene ID: 284827

  UniProt: Q3LI77

  
  
• Chr Location
  21q22.11; chr21:30430220-30431026 (+)  GRCh38

---

• MGI Vertebrate Homology
  Krtap13-20 stringent orthology
  3 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: KRTAP13-1, KRTAP13-2, KRTAP13-4
• Gene Tree
  Krtap13-20
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  6
• Endonuclease-mediated
  3
• Targeted
  2
• Genomic Mutations
  3 involving Krtap13-20
• Find Mice (IMSR)
  13 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  2

Expression

• Assay Results
  726
• Tissues
  17
• cDNA Data
  4
• Literature Summary
  3

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS79475.1

• Ensembl
  ENSMUSG00000068078 (Evidence)
• NCBI Gene
  117172

Representative Sequences			Length	Strain/Species
genomic	117172	NCBI Gene Model | MGI Sequence Detail	943	C57BL/6J
transcript	NM_054100	RefSeq | MGI Sequence Detail	943	C57BL/6
polypeptide	NP_473441	RefSeq | MGI Sequence Detail	214	C57BL/6

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR007951 Keratin-associated protein, PMG type

Molecular
Reagents

• All nucleic 5

  cDNA 4

  Primer pair 1

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:7593838

References

• Summaries
  All 29

  Developmental Gene Expression 3

  Gene Ontology 2

  Phenotypes 8
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:361105 Tateossian H, et al., DYRK1A kinase triplication is the major cause of Otitis Media in Down Syndrome. Elife. 2025;

TSS for Krtap13-20:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4949	Chr16:88555732-88555739 (+)	1 bp