Atp6v0c-ps1 Pseudogene Detail

Summary

• Symbol
  Atp6v0c-ps1
• Name
  ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 1
• Synonyms
  Atp6c1, Atp6c-rs1, Atp6l-ps1, lysosomal 16kDa, MGPLlambda1-2

• Feature Type
  pseudogene
• IDs
  MGI:2151814
  NCBI Gene: 545901
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:4415437-4415899 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 2.55 cM
• Mapping Data
  6 experiments

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2151814	pseudogene	Chr7:4415322-4416442 (+)
129S1/SvImJ	ENSMUSG00200041900	pseudogene	Chr7:1149991-1150453 (+)
A/J	ENSMUSG00195052261	pseudogene	Chr7:1129874-1130336 (+)
AKR/J	ENSMUSG00220030907	pseudogene	Chr7:2965829-2966291 (-)
BALB/cJ	ENSMUSG00180051961	pseudogene	Chr7:1095966-1096428 (+)
C3H/HeJ	ENSMUSG00175050642	pseudogene	Chr7:1088243-1088705 (+)
C57BL/6NJ	ENSMUSG00215045111	pseudogene	Chr7:1132975-1133437 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030443	pseudogene	Chr7:1307938-1308402 (+)
CBA/J	ENSMUSG00210048448	pseudogene	Chr7:1088230-1088692 (+)
DBA/2J	ENSMUSG00185047526	pseudogene	Chr7:1273712-1274174 (+)
FVB/NJ	ENSMUSG00205048303	pseudogene	Chr7:1077122-1077584 (+)
JF1/MsJ	ENSUMUG00000051605	pseudogene	Chr7:1349562-1349982 (+)
LP/J	ENSMUSG00230040432	pseudogene	Chr7:4295495-4295957 (+)
NOD/ShiLtJ	ENSMUSG00190049902	pseudogene	Chr7:1160172-1160634 (+)
NZO/HlLtJ	ENSMUSG00225021796	pseudogene	Chr7:2208223-2208685 (+)
PWK/PhJ	ENSLUMG00010050026	pseudogene	Chr7:4844316-4844736 (+)
SPRET/EiJ	ENSMSPG00010049534	pseudogene	Chr7:1292832-1293296 (+)
WSB/EiJ	ENSIUOG00005052636	pseudogene	Chr7:1102245-1102707 (+)

Homology

• Gene Tree
  Atp6v0c-ps1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108761 (Evidence)
• NCBI Gene
  545901

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108761	Ensembl Gene Model | MGI Sequence Detail	463	C57BL/6J
transcript	ENSMUST00000206596	Ensembl | MGI Sequence Detail	463	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGD-MRK-36155, MGI:107583, MGI:1338878

References

• Summaries
  All 15
• Earliest
  J:44191 Kubagawa H, et al., A novel pair of immunoglobulin-like receptors expressed by B cells and myeloid cells [see comments]. Proc Natl Acad Sci U S A. 1997 May 13;94(10):5261-6
• Latest
  J:79792 Simckes AM, et al., Chromosomal localization of three vacuolar-H(+)-ATPase 16 kDa subunit (ATP6V0C) genes in the murine genome. Cytogenet Genome Res. 2002;97(1-2):111-5

TSS for Atp6v0c-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64327	Chr7:4415320-4415329 (+)	-112 bp