Atp6v0c-ps1 Pseudogene Detail

Summary

• Symbol
  Atp6v0c-ps1
• Name
  ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 1
• Synonyms
  Atp6c1, Atp6c-rs1, Atp6l-ps1, lysosomal 16kDa, MGPLlambda1-2

• Feature Type
  pseudogene
• IDs
  MGI:2151814
  NCBI Gene: 545901
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:4415437-4415899 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 2.55 cM
• Mapping Data
  6 experiments

Strain
Comparison

• SNPs within 2kb
  46 from dbSNP Build 142
• Strain Annotations
  15
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2151814	pseudogene	Chr7:4415322-4416442 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013793	pseudogene	Chr7:1326599-1327061 (+)
A/J	MGP_AJ_G0013789	pseudogene	Chr7:1338267-1339291 (+)
AKR/J	MGP_AKRJ_G0013742	pseudogene	Chr7:1409035-1409497 (+)
BALB/cJ	MGP_BALBcJ_G0013771	pseudogene	Chr7:1401906-1402368 (+)
C3H/HeJ	MGP_C3HHeJ_G0013597	pseudogene	Chr7:1370461-1370923 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014164	pseudogene	Chr7:1354401-1354863 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013574	pseudogene	Chr7:1559839-1560301 (+)
DBA/2J	MGP_DBA2J_G0013655	pseudogene	Chr7:1300028-1300490 (+)
FVB/NJ	MGP_FVBNJ_G0013654	pseudogene	Chr7:1281818-1282680 (+)
LP/J	MGP_LPJ_G0013342	pseudogene	Chr6:36124715-36125117 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013669	pseudogene	Chr7:1489487-1489949 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014145	pseudogene	Chr7:1311464-1311926 (+)
PWK/PhJ	MGP_PWKPhJ_G0010877	pseudogene	Chr17:20848399-20849057 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013340	pseudogene	Chr7:1320136-1320799 (+)

Homology

• Gene Tree
  Atp6v0c-ps1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000108761 (Evidence)
• NCBI Gene
  545901

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108761	Ensembl Gene Model | MGI Sequence Detail	463	C57BL/6J
transcript	ENSMUST00000206596	Ensembl | MGI Sequence Detail	463	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGD-MRK-36155, MGI:107583, MGI:1338878

References

• Summaries
  All 14
• Earliest
  J:44191 Kubagawa H, et al., A novel pair of immunoglobulin-like receptors expressed by B cells and myeloid cells [see comments]. Proc Natl Acad Sci U S A. 1997 May 13;94(10):5261-6
• Latest
  J:79792 Simckes AM, et al., Chromosomal localization of three vacuolar-H(+)-ATPase 16 kDa subunit (ATP6V0C) genes in the murine genome. Cytogenet Genome Res. 2002;97(1-2):111-5

TSS for Atp6v0c-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64327	Chr7:4415320-4415329 (+)	-112 bp