Tpbpb Gene Detail

Summary

• Symbol
  Tpbpb
• Name
  trophoblast specific protein beta
• Synonyms
  1600012N09Rik

• Feature Type
  protein coding gene
• IDs
  MGI:2151721
  NCBI Gene: 116913
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr13:61049109-61052661 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 32.53 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2151721	protein coding gene	Chr13:61049002-61052694 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0020653	protein coding gene	Chr13:60678570-60681716 (-)
A/J	MGP_AJ_G0020608	protein coding gene	Chr13:58394871-58398287 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0020604	protein coding gene	Chr13:58657867-58663662 (-)
C3H/HeJ	MGP_C3HHeJ_G0020401	protein coding gene	Chr13:59934971-59937708 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0021038	protein coding gene	Chr13:62486395-62489746 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018621	protein coding gene	Chr13:56258206-56260617 (-)
CAST/EiJ	MGP_CASTEiJ_G0019917	protein coding gene	Chr13:60161381-60163789 (-)
CBA/J	MGP_CBAJ_G0020361	protein coding gene	Chr13:64832695-64837362 (-)
DBA/2J	MGP_DBA2J_G0020485	protein coding gene	Chr13:57930025-57933057 (-)
FVB/NJ	MGP_FVBNJ_G0020463	protein coding gene	Chr13:57430670-57437841 (-)
LP/J	MGP_LPJ_G0020561	protein coding gene	Chr13:60925391-60928613 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0020493	protein coding gene	Chr13:64103755-64106361 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0021081	protein coding gene	Chr13:59744716-59747940 (-)
PWK/PhJ	MGP_PWKPhJ_G0019671	protein coding gene	Chr13:57975438-57978079 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0019499	protein coding gene	Chr13:58669085-58705419 (-)
WSB/EiJ	MGP_WSBEiJ_G0019979	protein coding gene	Chr13:60202330-60249414 (-)

Homology

• Alliance of Genome Resources
  Tpbpb stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Tpbpb
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Tpbpb
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  746
• Tissues
  29
• cDNA Data
  101
• Literature Summary
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• Tpbpb interacts with 77 markers (Mir9-1, Mir9-2, Mir9-3, ...) View All

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  2
• UniProt
  3
• CCDS
  CCDS36692.1

• Ensembl
  ENSMUSG00000062705 (Evidence)
• NCBI Gene
  116913

Representative Sequences			Length	Strain/Species
genomic	116913	NCBI Gene Model | MGI Sequence Detail	3553	C57BL/6J
transcript	NM_026429	RefSeq | MGI Sequence Detail	736	C57BL/6
polypeptide	NP_080705	RefSeq | MGI Sequence Detail	121	C57BL/6

Protein
Information

• UniProt
  3 Sequences

Molecular
Reagents

• All nucleic 103

  cDNA 102

  Primer pair 1

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:1915132

References

• Summaries
  All 24

  Developmental Gene Expression 5

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:296367 Roberts GAG, et al., Characterising the dynamics of placental glycogen stores in the mouse. Placenta. 2020 Sep 15;99:131-140

TSS for Tpbpb:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122921	Chr13:61052934-61052947 (-)	-280 bp
Tssr122920	Chr13:61052653-61052665 (-)	2 bp
Tssr122919	Chr13:61050402-61050416 (-)	2,252 bp
Tssr122918	Chr13:61049167-61049176 (-)	3,489 bp