Arl4aos Gene Detail

Summary

• Symbol
  Arl4aos
• Name
  ADP-ribosylation factor-like 4A, opposite strand
• Synonyms
  4930555J06Rik, Gm4547

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:2151103
  NCBI Gene: 100043606
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr12:40088076-40091297 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 18.06 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  174 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2151103	antisense lncRNA gene	Chr12:40088044-40096632 (+)
129S1/SvImJ	ENSMUSG00200011636	lncRNA gene	Chr12:31962948-31964876 (+)
A/J	ENSMUSG00195019017	lncRNA gene	Chr12:34642905-34644837 (+)
AKR/J	ENSMUSG00220005399	lncRNA gene	Chr12:32632956-32634888 (+)
BALB/cJ	ENSMUSG00180003665	lncRNA gene	Chr12:33630060-33631992 (+)
C3H/HeJ	ENSMUSG00175017351	lncRNA gene	Chr12:36683343-36685275 (+)
C57BL/6NJ	ENSMUSG00215013630	lncRNA gene	Chr12:33026754-33028682 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002773	antisense lncRNA gene	Chr12:36320388-36322294 (+)
CAST/EiJ	ENSTCUG00005003697	lncRNA gene	Chr12:33396894-33398833 (+)
CBA/J	ENSMUSG00210016164	lncRNA gene	Chr12:33162419-33164347 (+)
DBA/2J	ENSMUSG00185020426	lncRNA gene	Chr12:35195564-35197492 (+)
FVB/NJ	ENSMUSG00205001641	lncRNA gene	Chr12:33046108-33048028 (+)
JF1/MsJ	ENSUMUG00000011857	lncRNA gene	Chr12:39381202-39383145 (+)
LP/J	ENSMUSG00230010644	lncRNA gene	Chr12:42128077-42130005 (+)
NOD/ShiLtJ	ENSMUSG00190003688	lncRNA gene	Chr12:32191903-32193823 (+)
NZO/HlLtJ	ENSMUSG00225031612	lncRNA gene	Chr12:44346962-44348890 (+)
PWK/PhJ	ENSLUMG00010012812	lncRNA gene	Chr12:33536492-33538413 (+)
SPRET/EiJ	ENSMSPG00010002028	lncRNA gene	Chr12:34377469-34379389 (+)
WSB/EiJ	ENSIUOG00005001335	lncRNA gene	Chr12:32919540-32921460 (+)

Homology

• Gene Tree
  Arl4aos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  2

• Ensembl
  ENSMUSG00000086315 (Evidence)
• NCBI Gene
  100043606

Representative Sequences			Length	Strain/Species
genomic	100043606	NCBI Gene Model | MGI Sequence Detail	3222	C57BL/6J
transcript	NR_166749	RefSeq | MGI Sequence Detail	1757	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:3782731

References

• Summaries
  All 12

  Phenotypes 1
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Arl4aos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113299	Chr12:40088069-40088090 (+)	4 bp
Tssr113300	Chr12:40088092-40088106 (+)	23 bp
Tssr113301	Chr12:40088108-40088117 (+)	37 bp
Tssr113302	Chr12:40088320-40088334 (+)	251 bp