Vmn1r-ps34 Pseudogene Detail

Summary

• Symbol
  Vmn1r-ps34
• Name
  vomeronasal 1 receptor, pseudogene 34
• Synonyms
  V1r-ps5

• Feature Type
  pseudogene
• IDs
  MGI:2148535
  NCBI Gene: 113873
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:90219300-90220225 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 40.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2148535	pseudogene	Chr6:90219254-90220225 (+)
129S1/SvImJ	ENSMUSG00200045816	pseudogene	Chr6:87164651-87165593 (+)
A/J	ENSMUSG00195040414	pseudogene	Chr6:86889539-86890486 (+)
AKR/J	ENSMUSG00220034599	pseudogene	Chr6:85791034-85791976 (+)
BALB/cJ	ENSMUSG00180019975	pseudogene	Chr6:87253226-87254168 (+)
C3H/HeJ	ENSMUSG00175026019	pseudogene	Chr6:90178916-90179858 (-)
C57BL/6NJ	ENSMUSG00215033559	pseudogene	Chr6:87254088-87255030 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018724	pseudogene	Chr6:87377141-87378089 (+)
CBA/J	ENSMUSG00210045592	pseudogene	Chr6:87040366-87041308 (+)
DBA/2J	ENSMUSG00185047410	pseudogene	Chr6:87587726-87588668 (+)
FVB/NJ	ENSMUSG00205041638	pseudogene	Chr6:86220798-86221740 (+)
JF1/MsJ	ENSUMUG00000051083	pseudogene	Chr6:86531908-86532856 (+)
LP/J	ENSMUSG00230050862	pseudogene	Chr6:88722422-88723364 (+)
NOD/ShiLtJ	ENSMUSG00190045024	pseudogene	Chr6:86659525-86660467 (+)
NZO/HlLtJ	ENSMUSG00225019859	pseudogene	Chr6:90728870-90729812 (+)
PWK/PhJ	ENSLUMG00010036924	pseudogene	Chr6:85953147-85954089 (+)
SPRET/EiJ	ENSMSPG00010044421	pseudogene	Chr6:88214070-88215017 (+)
WSB/EiJ	ENSIUOG00005035405	pseudogene	Chr6:87659743-87660690 (+)

Homology

• Gene Tree
  Vmn1r-ps34
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Vmn1r-ps34
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000099754 (Evidence)
• NCBI Gene
  113873

Representative Sequences			Length	Strain/Species
genomic	113873	NCBI Gene Model | MGI Sequence Detail	926	C57BL/6J

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:21726 Champion KM, et al., Identification of a heritable deficiency of the folate-dependent enzyme 10-formyltetrahydrofolate dehydrogenase in mice. Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11338-42
• Latest
  J:150929 Young J, et al., Extreme variability among mammalian V1R gene families. Genome Biol Evol. 2009;20(1):10-18