Vmn1r-ps27 Pseudogene Detail

Summary

• Symbol
  Vmn1r-ps27
• Name
  vomeronasal 1 receptor, pseudogene 27
• Synonyms
  V1r-ps3

• Feature Type
  pseudogene
• IDs
  MGI:2148533
  NCBI Gene: 113871
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:89781990-89782926 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 40.02 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  191 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2148533	pseudogene	Chr6:89781990-89782974 (-)
129S1/SvImJ	ENSMUSG00200045883	pseudogene	Chr6:86727260-86730535 (-)
A/J	ENSMUSG00195042772	pseudogene	Chr6:86434555-86437830 (-)
AKR/J	ENSMUSG00220037238	pseudogene	Chr6:85351096-85354371 (-)
BALB/cJ	ENSMUSG00180018282	pseudogene	Chr6:86813308-86816583 (-)
C3H/HeJ	ENSMUSG00175026809	pseudogene	Chr6:90613978-90617253 (+)
C57BL/6NJ	ENSMUSG00215035283	pseudogene	Chr6:86814162-86817437 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018895	pseudogene	Chr6:86683108-86686383 (-)
CBA/J	ENSMUSG00210045084	pseudogene	Chr6:86602984-86606259 (-)
DBA/2J	ENSMUSG00185046995	pseudogene	Chr6:87150318-87153593 (-)
FVB/NJ	ENSMUSG00205041522	pseudogene	Chr6:85782402-85785677 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230050348	pseudogene	Chr6:88285039-88288314 (-)
NOD/ShiLtJ	ENSMUSG00190044888	pseudogene	Chr6:86222141-86225416 (-)
NZO/HlLtJ	ENSMUSG00225020822	pseudogene	Chr6:90286639-90289914 (-)
PWK/PhJ	ENSLUMG00010037088	pseudogene	Chr6:85515289-85518564 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005035365	pseudogene	Chr6:87186423-87189712 (-)

Homology

• Gene Tree
  Vmn1r-ps27
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Vmn1r-ps27
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000092237 (Evidence)
• NCBI Gene
  113871

Representative Sequences			Length	Strain/Species
genomic	113871	NCBI Gene Model | MGI Sequence Detail	937	C57BL/6J

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:21726 Champion KM, et al., Identification of a heritable deficiency of the folate-dependent enzyme 10-formyltetrahydrofolate dehydrogenase in mice. Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11338-42
• Latest
  J:150929 Young J, et al., Extreme variability among mammalian V1R gene families. Genome Biol Evol. 2009;20(1):10-18