AV205837 Gene Detail

Summary

• Symbol
  AV205837
• Name
  expressed sequence AV205837

• Feature Type
  lncRNA gene
• IDs
  MGI:2146600
  NCBI Gene: 102636590
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:31144108-31145752 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2146600	lncRNA gene	Chr16:31144037-31157929 (+)
129S1/SvImJ	ENSMUSG00200036241	lncRNA gene	Chr16:28155630-28157933 (+)
A/J	ENSMUSG00195030090	lncRNA gene	Chr16:27707818-27710121 (+)
AKR/J	ENSMUSG00220032409	lncRNA gene	Chr16:28009261-28011563 (+)
BALB/cJ	ENSMUSG00180032118	lncRNA gene	Chr16:27928856-27931159 (+)
C3H/HeJ	ENSMUSG00175037866	lncRNA gene	Chr16:28079568-28081871 (+)
C57BL/6NJ	ENSMUSG00215027757	lncRNA gene	Chr16:27949047-27951350 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037628	lncRNA gene	Chr16:28348793-28351096 (+)
CBA/J	ENSMUSG00210040265	lncRNA gene	Chr16:28121585-28123888 (+)
DBA/2J	ENSMUSG00185019846	lncRNA gene	Chr16:28037041-28039344 (+)
FVB/NJ	ENSMUSG00205023413	lncRNA gene	Chr16:28044497-28046800 (+)
JF1/MsJ	ENSUMUG00000043688	lncRNA gene	Chr16:28193565-28195868 (+)
LP/J	ENSMUSG00230033191	lncRNA gene	Chr16:30605829-30608132 (+)
NOD/ShiLtJ	ENSMUSG00190034040	lncRNA gene	Chr16:28223021-28225324 (+)
NZO/HlLtJ	ENSMUSG00225039721	lncRNA gene	Chr16:33841003-33843306 (+)
PWK/PhJ	ENSLUMG00010035952	lncRNA gene	Chr16:28027873-28030176 (+)
SPRET/EiJ	ENSMSPG00010018812	lncRNA gene	Chr16:28003957-28006237 (+)
WSB/EiJ	ENSIUOG00005036255	lncRNA gene	Chr16:28201736-28204039 (+)

Homology

• Gene Tree
  AV205837
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000116973 (Evidence)
• NCBI Gene
  102636590

Representative Sequences			Length	Strain/Species
genomic	102636590	NCBI Gene Model | MGI Sequence Detail	1645	C57BL/6J
transcript	NR_155301	RefSeq | MGI Sequence Detail	663	ZRU/MplStud

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

TSS for AV205837:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137891	Chr16:31144075-31144087 (+)	-27 bp
Tssr137892	Chr16:31144094-31144112 (+)	-5 bp