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Csdc2 Gene Detail
Summary
  • Symbol
    Csdc2
  • Name
    cold shock domain containing C2, RNA binding
  • Feature Type
    protein coding gene
  • IDs
    MGI:2146027
    NCBI Gene: 105859
  • Alliance
    genome feature page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:81820960-81835142 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 38.28 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    431 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2146027
 protein coding gene Chr15:81820960-81835142 (+)
129S1/SvImJ ENSMUSG00200052072
 protein coding gene Chr15:78927968-78942150 (+)
A/J ENSMUSG00195042865
 protein coding gene Chr15:78865145-78879362 (+)
AKR/J ENSMUSG00220052078
 protein coding gene Chr15:78908290-78922509 (+)
BALB/cJ ENSMUSG00180049312
 protein coding gene Chr15:78742093-78756315 (+)
C3H/HeJ ENSMUSG00175042865
 protein coding gene Chr15:79053081-79067298 (+)
C57BL/6NJ ENSMUSG00215052324
 protein coding gene Chr15:78838093-78852277 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020064
 protein coding gene Chr15:75947366-75962050 (+)
CAST/EiJ ENSTCUG00005041473
 protein coding gene Chr15:78358378-78372691 (+)
CBA/J ENSMUSG00210046249
 protein coding gene Chr15:78828168-78842389 (+)
DBA/2J ENSMUSG00185042809
 protein coding gene Chr15:78851380-78865595 (+)
FVB/NJ ENSMUSG00205023532
 protein coding gene Chr15:78579764-78593975 (+)
JF1/MsJ ENSUMUG00000041466
 protein coding gene Chr15:78431509-78445867 (+)
LP/J ENSMUSG00230051041
 protein coding gene Chr15:82175343-82189527 (+)
NOD/ShiLtJ ENSMUSG00190045929
 protein coding gene Chr15:78845271-78859482 (+)
NZO/HlLtJ ENSMUSG00225047652
 protein coding gene Chr15:82512461-82526685 (+)
PWK/PhJ ENSLUMG00010046219
 protein coding gene Chr15:78643025-78657294 (+)
SPRET/EiJ ENSMSPG00010046728
 protein coding gene Chr15:80284121-80297335 (+)
WSB/EiJ ENSIUOG00005041039
 protein coding gene Chr15:78920861-78935062 (+)



Homology
more
  • Human Ortholog
    CSDC2, cold shock domain containing C2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CSDC2, cold shock domain containing C2
  • Synonyms
    dJ347H13.2, PIPPIN
  • Links
    NCBI Gene ID: 27254
    UniProt: Q9Y534

  • Chr Location
    22q13.2; chr22:41560858-41577741 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    27 phenotype references
  • All Mutations and Alleles
    12
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    6
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    3 involving Csdc2
  • Incidental Mutations
    CvDC
  • Find Mice (IMSR)
    16 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    731
  • Tissues
    27
  • cDNA Data
    53
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 105859 NCBI Gene Model | MGI Sequence Detail 14183 C57BL/6J ±  kb
transcript NM_145473 RefSeq | MGI Sequence Detail 2507 C57BL/6  
polypeptide Q91YQ3 UniProt | EBI | MGI Sequence Detail 154 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 53
    cDNA 53

    Microarray probesets 4
Other
Accession IDs
less
MGI:2145994
References
more
  • Summaries
    All 56
    Developmental Gene Expression 5
    Diseases 1
    Gene Ontology 4
    Phenotypes 27
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:387680 Ahn B, et al., Disorganization of Transcriptional Regulation and Alteration of Keratin Family Gene Expression in Hairy Ear Mice. Genes (Basel). 2026 Jan 31;17(2)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory