C130012C08Rik Gene Detail

Summary

• Symbol
  C130012C08Rik
• Name
  RIKEN cDNA C130012C08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2145684
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:22042504-22046168 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2145684	lncRNA gene	Chr14:22042504-22046168 (+)
129S1/SvImJ	ENSMUSG00200015333	unclassified gene	Chr14:13834102-13837770 (+)
A/J	ENSMUSG00195022452	unclassified gene	Chr14:14915257-14918921 (+)
AKR/J	ENSMUSG00220029866	unclassified gene	Chr14:14045861-14049525 (+)
BALB/cJ	ENSMUSG00180040955	unclassified gene	Chr14:14013996-14017660 (+)
C3H/HeJ	ENSMUSG00175023543	unclassified gene	Chr14:14070903-14074570 (+)
C57BL/6NJ	ENSMUSG00215035801	unclassified gene	Chr14:14260771-14264436 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000678	unclassified gene	Chr14:14769828-14773485 (+)
CAST/EiJ	ENSTCUG00005034867	unclassified gene	Chr14:14191946-14195615 (+)
CBA/J	ENSMUSG00210027266	unclassified gene	Chr14:14307142-14310810 (+)
DBA/2J	ENSMUSG00185039701	unclassified gene	Chr14:18592189-18595857 (+)
FVB/NJ	ENSMUSG00205039567	unclassified gene	Chr14:14147568-14151237 (+)
JF1/MsJ	ENSUMUG00000051180	unclassified gene	Chr14:25810965-25814629 (+)
LP/J	ENSMUSG00230040778	unclassified gene	Chr14:25873912-25877580 (+)
NOD/ShiLtJ	ENSMUSG00190039585	unclassified gene	Chr14:14305968-14309636 (+)
NZO/HlLtJ	ENSMUSG00225036665	unclassified gene	Chr14:20094248-20097914 (+)
PWK/PhJ	ENSLUMG00010022825	unclassified gene	Chr14:2450530-2454196 (+)
SPRET/EiJ	ENSMSPG00010034491	unclassified gene	Chr14:15945752-15949414 (+)
WSB/EiJ	ENSIUOG00005033281	unclassified gene	Chr14:14135111-14138771 (+)

Homology

• Gene Tree
  C130012C08Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000103160 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103160	Ensembl Gene Model | MGI Sequence Detail	3665	C57BL/6J
transcript	AK081373	GenBank | ENA | DDBJ | MGI Sequence Detail	3667	C57BL/6J

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for C130012C08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124463	Chr14:22045821-22045834 (+)	3,324 bp