AA536875 Gene Detail

Summary

• Symbol
  AA536875
• Name
  expressed sequence AA536875
• Synonyms
  LOC380934

• Feature Type
  lncRNA gene
• IDs
  MGI:2145569
  NCBI Gene: 380934
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:123405915-123413588 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  269 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2145569	lncRNA gene	Chr14:123280694-123502414 (+)
129S1/SvImJ	ENSMUSG00200009693	lncRNA gene	Chr14:112209267-112446737 (+)
A/J	ENSMUSG00195032447	lncRNA gene	Chr14:111939282-112180833 (+)
AKR/J	ENSMUSG00220008111	lncRNA gene	Chr14:111754716-111984575 (+)
BALB/cJ	ENSMUSG00180029776	lncRNA gene	Chr14:111431016-111672607 (+)
C3H/HeJ	ENSMUSG00175002019	lncRNA gene	Chr14:113343083-113565036 (+)
C57BL/6NJ	ENSMUSG00215026154	lncRNA gene	Chr14:111548904-111773225 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008310	lncRNA gene	Chr14:112939421-113156478 (+)
CBA/J	ENSMUSG00210027792	lncRNA gene	Chr14:112316110-112562530 (+)
DBA/2J	ENSMUSG00185014161	lncRNA gene	Chr14:117449912-117671877 (+)
FVB/NJ	ENSMUSG00205008548	lncRNA gene	Chr14:111038521-111279646 (+)
JF1/MsJ	ENSUMUG00000030659	lncRNA gene	Chr14:128434951-128667719 (+)
LP/J	ENSMUSG00230012799	lncRNA gene	Chr14:129421195-129643952 (+)
NOD/ShiLtJ	ENSMUSG00190026733	lncRNA gene	Chr14:112151124-112383402 (+)
NZO/HlLtJ	ENSMUSG00225029291	lncRNA gene	Chr14:119488916-119725806 (+)
PWK/PhJ	ENSLUMG00010031193	lncRNA gene	Chr14:111386954-111613173 (+)
SPRET/EiJ	ENSMSPG00010014773	lncRNA gene	Chr14:115693368-115931902 (+)
WSB/EiJ	ENSIUOG00005032263	lncRNA gene	Chr14:111334647-111553343 (+)

Homology

• Gene Tree
  AA536875
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  601
• Tissues
  4
• cDNA Data
  6
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  3

• Ensembl
  ENSMUSG00000115016 (Evidence)
• NCBI Gene
  380934

Representative Sequences			Length	Strain/Species
genomic	380934	NCBI Gene Model | MGI Sequence Detail	7674	C57BL/6J
transcript	NR_045143	RefSeq | MGI Sequence Detail	2053	C57BL/6

Molecular
Reagents

• All nucleic 7

  cDNA 6

  Primer pair 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2686437, MGI:5593065

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:285122 Sha QQ, et al., Characterization of zygotic genome activation-dependent maternal mRNA clearance in mouse. Nucleic Acids Res. 2020 Jan 24;48(2):879-894