AI463170 Gene Detail

Summary

• Symbol
  AI463170
• Name
  expressed sequence AI463170

• Feature Type
  lncRNA gene
• IDs
  MGI:2144839
  NCBI Gene: 100504549
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:76593746-76594699 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 33.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2144839	lncRNA gene	Chr12:76593745-76594735 (-)
129S1/SvImJ	ENSMUSG00200033247	lncRNA gene	Chr12:68539462-68540434 (-)
A/J	ENSMUSG00195035574	lncRNA gene	Chr12:71251615-71252587 (-)
AKR/J	ENSMUSG00220015730	lncRNA gene	Chr12:69009998-69010970 (-)
BALB/cJ	ENSMUSG00180034599	lncRNA gene	Chr12:70212304-70213276 (-)
C3H/HeJ	ENSMUSG00175043710	lncRNA gene	Chr12:73379314-73380286 (-)
C57BL/6NJ	ENSMUSG00215029211	lncRNA gene	Chr12:69590448-69591420 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036401	lncRNA gene	Chr12:69572526-69573498 (-)
CBA/J	ENSMUSG00210030988	lncRNA gene	Chr12:69798688-69799660 (-)
DBA/2J	ENSMUSG00185043181	lncRNA gene	Chr12:71662986-71663958 (-)
FVB/NJ	ENSMUSG00205036529	lncRNA gene	Chr12:69426388-69427361 (-)
JF1/MsJ	ENSUMUG00000024115	lncRNA gene	Chr12:75700171-75701144 (-)
LP/J	ENSMUSG00230022450	lncRNA gene	Chr12:78663207-78664179 (-)
NOD/ShiLtJ	ENSMUSG00190013458	lncRNA gene	Chr12:68849870-68850842 (-)
NZO/HlLtJ	ENSMUSG00225039027	lncRNA gene	Chr12:80725090-80726062 (-)
PWK/PhJ	ENSLUMG00010034052	lncRNA gene	Chr12:69729863-69730836 (-)
SPRET/EiJ	ENSMSPG00010020581	lncRNA gene	Chr12:71500303-71501283 (-)
WSB/EiJ	ENSIUOG00005012898	lncRNA gene	Chr12:69490979-69491952 (-)

Homology

• Gene Tree
  AI463170
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  3
• Genomic Mutations
  1 involving AI463170
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1

• Ensembl
  ENSMUSG00000112388 (Evidence)
• NCBI Gene
  100504549

Representative Sequences			Length	Strain/Species
genomic	100504549	NCBI Gene Model | MGI Sequence Detail	954	C57BL/6J
transcript	NR_046044	RefSeq | MGI Sequence Detail	540	C57BL/6

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 2

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for AI463170:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116731	Chr12:76594622-76594648 (-)	64 bp